105 related articles for article (PubMed ID: 1372979)
1. A method for determining the positions of polar hydrogens added to a protein structure that maximizes protein hydrogen bonding.
Bass MB; Hopkins DF; Jaquysh WA; Ornstein RL
Proteins; 1992 Mar; 12(3):266-77. PubMed ID: 1372979
[TBL] [Abstract][Full Text] [Related]
2. Polar hydrogen positions in proteins: empirical energy placement and neutron diffraction comparison.
Brünger AT; Karplus M
Proteins; 1988; 4(2):148-56. PubMed ID: 3227015
[TBL] [Abstract][Full Text] [Related]
3. A novel serine protease inhibition motif involving a multi-centered short hydrogen bonding network at the active site.
Katz BA; Elrod K; Luong C; Rice MJ; Mackman RL; Sprengeler PA; Spencer J; Hataye J; Janc J; Link J; Litvak J; Rai R; Rice K; Sideris S; Verner E; Young W
J Mol Biol; 2001 Apr; 307(5):1451-86. PubMed ID: 11292354
[TBL] [Abstract][Full Text] [Related]
4. Conformational sampling by NMR solution structures calculated with the program DIANA evaluated by comparison with long-time molecular dynamics calculations in explicit water.
Berndt KD; Güntert P; Wüthrich K
Proteins; 1996 Mar; 24(3):304-13. PubMed ID: 8778777
[TBL] [Abstract][Full Text] [Related]
5. Solvent structure in crystals of trypsin determined by X-ray and neutron diffraction.
Finer-Moore JS; Kossiakoff AA; Hurley JH; Earnest T; Stroud RM
Proteins; 1992 Mar; 12(3):203-22. PubMed ID: 1557349
[TBL] [Abstract][Full Text] [Related]
6. Empirical solvation models in the context of conformational energy searches: application to bovine pancreatic trypsin inhibitor.
Williams RL; Vila J; Perrot G; Scheraga HA
Proteins; 1992 Sep; 14(1):110-9. PubMed ID: 1384032
[TBL] [Abstract][Full Text] [Related]
7. The ribbon of hydrogen bonds and the pseudomolecule in the three-dimensional structure of globular proteins. III. Bovine pancreatic ribonuclease A and bovine seminal ribonuclease.
Peters D; Peters J
Biopolymers; 2002 Dec; 65(5):347-53. PubMed ID: 12389214
[TBL] [Abstract][Full Text] [Related]
8. High-resolution structures of three new trypsin-squash-inhibitor complexes: a detailed comparison with other trypsins and their complexes.
Helland R; Berglund GI; Otlewski J; Apostoluk W; Andersen OA; Willassen NP; Smalås AO
Acta Crystallogr D Biol Crystallogr; 1999 Jan; 55(Pt 1):139-48. PubMed ID: 10089404
[TBL] [Abstract][Full Text] [Related]
9. NMR structural analysis of an analog of an intermediate formed in the rate-determining step of one pathway in the oxidative folding of bovine pancreatic ribonuclease A: automated analysis of 1H, 13C, and 15N resonance assignments for wild-type and [C65S, C72S] mutant forms.
Shimotakahara S; Rios CB; Laity JH; Zimmerman DE; Scheraga HA; Montelione GT
Biochemistry; 1997 Jun; 36(23):6915-29. PubMed ID: 9188686
[TBL] [Abstract][Full Text] [Related]
10. Statistical and molecular dynamics studies of buried waters in globular proteins.
Park S; Saven JG
Proteins; 2005 Aug; 60(3):450-63. PubMed ID: 15937899
[TBL] [Abstract][Full Text] [Related]
11. Asparagine and glutamine: using hydrogen atom contacts in the choice of side-chain amide orientation.
Word JM; Lovell SC; Richardson JS; Richardson DC
J Mol Biol; 1999 Jan; 285(4):1735-47. PubMed ID: 9917408
[TBL] [Abstract][Full Text] [Related]
12. "Designing out" disulfide bonds: thermodynamic properties of 30-51 cystine substitution mutants of bovine pancreatic trypsin inhibitor.
Liu Y; Breslauer K; Anderson S
Biochemistry; 1997 May; 36(18):5323-35. PubMed ID: 9154914
[TBL] [Abstract][Full Text] [Related]
13. The crystal structures of the complexes between bovine beta-trypsin and ten P1 variants of BPTI.
Helland R; Otlewski J; Sundheim O; Dadlez M; Smalås AO
J Mol Biol; 1999 Apr; 287(5):923-42. PubMed ID: 10222201
[TBL] [Abstract][Full Text] [Related]
14. Thermodynamic criterion for the conformation of P1 residues of substrates and of inhibitors in complexes with serine proteinases.
Qasim MA; Lu SM; Ding J; Bateman KS; James MN; Anderson S; Song J; Markley JL; Ganz PJ; Saunders CW; Laskowski M
Biochemistry; 1999 Jun; 38(22):7142-50. PubMed ID: 10353824
[TBL] [Abstract][Full Text] [Related]
15. Tyrosine hydrogen bonds make a large contribution to protein stability.
Pace CN; Horn G; Hebert EJ; Bechert J; Shaw K; Urbanikova L; Scholtz JM; Sevcik J
J Mol Biol; 2001 Sep; 312(2):393-404. PubMed ID: 11554795
[TBL] [Abstract][Full Text] [Related]
16. Retardation of the unfolding process by single N-glycosylation of ribonuclease A based on molecular dynamics simulations.
Choi Y; Lee JH; Hwang S; Kim JK; Jeong K; Jung S
Biopolymers; 2008 Feb; 89(2):114-23. PubMed ID: 17937402
[TBL] [Abstract][Full Text] [Related]
17. Determination of a high precision structure of a novel protein, Linum usitatissimum trypsin inhibitor (LUTI), using computer-aided assignment of NOESY cross-peaks.
Cierpicki T; Otlewski J
J Mol Biol; 2000 Oct; 302(5):1179-92. PubMed ID: 11183783
[TBL] [Abstract][Full Text] [Related]
18. Assignment of polar states for protein amino acid residues using an interaction cluster decomposition algorithm and its application to high resolution protein structure modeling.
Li X; Jacobson MP; Zhu K; Zhao S; Friesner RA
Proteins; 2007 Mar; 66(4):824-37. PubMed ID: 17154422
[TBL] [Abstract][Full Text] [Related]
19. Positioning hydrogen atoms by optimizing hydrogen-bond networks in protein structures.
Hooft RW; Sander C; Vriend G
Proteins; 1996 Dec; 26(4):363-76. PubMed ID: 8990493
[TBL] [Abstract][Full Text] [Related]
20. Understanding water: molecular dynamics simulations of myoglobin.
Gu W; Garcia AE; Schoenborn BP
Basic Life Sci; 1996; 64():289-98. PubMed ID: 9092458
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
