174 related articles for article (PubMed ID: 14500811)
1. Using pyrene-labeled HIV-1 TAR to measure RNA-small molecule binding.
Blount KF; Tor Y
Nucleic Acids Res; 2003 Oct; 31(19):5490-500. PubMed ID: 14500811
[TBL] [Abstract][Full Text] [Related]
2. Conformational constraint as a means for understanding RNA-aminoglycoside specificity.
Blount KF; Zhao F; Hermann T; Tor Y
J Am Chem Soc; 2005 Jul; 127(27):9818-29. PubMed ID: 15998086
[TBL] [Abstract][Full Text] [Related]
3. RNA-ligand interactions: affinity and specificity of aminoglycoside dimers and acridine conjugates to the HIV-1 Rev response element.
Luedtke NW; Liu Q; Tor Y
Biochemistry; 2003 Oct; 42(39):11391-403. PubMed ID: 14516190
[TBL] [Abstract][Full Text] [Related]
4. Understanding the characteristics of nonspecific binding of drug-like compounds to canonical stem-loop RNAs and their implications for functional cellular assays.
Kelly ML; Chu CC; Shi H; Ganser LR; Bogerd HP; Huynh K; Hou Y; Cullen BR; Al-Hashimi HM
RNA; 2021 Jan; 27(1):12-26. PubMed ID: 33028652
[TBL] [Abstract][Full Text] [Related]
5. Specificity of aminoglycoside binding to RNA constructs derived from the 16S rRNA decoding region and the HIV-RRE activator region.
Wang Y; Hamasaki K; Rando RR
Biochemistry; 1997 Jan; 36(4):768-79. PubMed ID: 9020774
[TBL] [Abstract][Full Text] [Related]
6. A fluorescent aminosugar to rapidly screen and study RNA binders.
Ranjan N; Arya DP
Methods Enzymol; 2019; 623():291-314. PubMed ID: 31239051
[TBL] [Abstract][Full Text] [Related]
7. Recognition of a cognate RNA aptamer by neomycin B: quantitative evaluation of hydrogen bonding and electrostatic interactions.
Cowan JA; Ohyama T; Wang D; Natarajan K
Nucleic Acids Res; 2000 Aug; 28(15):2935-42. PubMed ID: 10908357
[TBL] [Abstract][Full Text] [Related]
8. Effect of salt concentration on the conformation of TAR RNA and its association with aminoglycoside antibiotics.
Smith AL; Kassman J; Srour KJ; Soto AM
Biochemistry; 2011 Nov; 50(44):9434-45. PubMed ID: 21916409
[TBL] [Abstract][Full Text] [Related]
9. Probing RNA-protein interactions using pyrene-labeled oligodeoxynucleotides: Qbeta replicase efficiently binds small RNAs by recognizing pyrimidine residues.
Preuss R; Dapprich J; Walter NG
J Mol Biol; 1997 Oct; 273(3):600-13. PubMed ID: 9356249
[TBL] [Abstract][Full Text] [Related]
10. Fluorescent HIV-1 Dimerization Initiation Site: design, properties, and use for ligand discovery.
Tam VK; Kwong D; Tor Y
J Am Chem Soc; 2007 Mar; 129(11):3257-66. PubMed ID: 17319662
[TBL] [Abstract][Full Text] [Related]
11. Click dimers to target HIV TAR RNA conformation.
Kumar S; Kellish P; Robinson WE; Wang D; Appella DH; Arya DP
Biochemistry; 2012 Mar; 51(11):2331-47. PubMed ID: 22339203
[TBL] [Abstract][Full Text] [Related]
12. RNA molecules that specifically and stoichiometrically bind aminoglycoside antibiotics with high affinities.
Wang Y; Killian J; Hamasaki K; Rando RR
Biochemistry; 1996 Sep; 35(38):12338-46. PubMed ID: 8823168
[TBL] [Abstract][Full Text] [Related]
13. Probing interaction of a fluorescent ligand with HIV TAR RNA.
Qi L; Zhang J; He T; Huo Y; Zhang ZQ
Spectrochim Acta A Mol Biomol Spectrosc; 2017 Feb; 173():93-98. PubMed ID: 27611591
[TBL] [Abstract][Full Text] [Related]
14. Binding of neomycin to the TAR element of HIV-1 RNA induces dissociation of Tat protein by an allosteric mechanism.
Wang S; Huber PW; Cui M; Czarnik AW; Mei HY
Biochemistry; 1998 Apr; 37(16):5549-57. PubMed ID: 9548939
[TBL] [Abstract][Full Text] [Related]
15. Rational design of inhibitors of HIV-1 TAR RNA through the stabilisation of electrostatic "hot spots".
Davis B; Afshar M; Varani G; Murchie AI; Karn J; Lentzen G; Drysdale M; Bower J; Potter AJ; Starkey ID; Swarbrick T; Aboul-ela F
J Mol Biol; 2004 Feb; 336(2):343-56. PubMed ID: 14757049
[TBL] [Abstract][Full Text] [Related]
16. Ligand-induced changes in 2-aminopurine fluorescence as a probe for small molecule binding to HIV-1 TAR RNA.
Bradrick TD; Marino JP
RNA; 2004 Sep; 10(9):1459-68. PubMed ID: 15273324
[TBL] [Abstract][Full Text] [Related]
17. A tale of two targets: differential RNA selectivity of nucleobase-aminoglycoside conjugates.
Blount KF; Tor Y
Chembiochem; 2006 Oct; 7(10):1612-21. PubMed ID: 16915600
[TBL] [Abstract][Full Text] [Related]
18. Cleavage of RNA oligonucleotides by aminoglycosides.
Belousoff MJ; Graham B; Spiccia L; Tor Y
Org Biomol Chem; 2009 Jan; 7(1):30-3. PubMed ID: 19081939
[TBL] [Abstract][Full Text] [Related]
19. Enhanced RNA binding of dimerized aminoglycosides.
Michael K; Wang H; Tor Y
Bioorg Med Chem; 1999 Jul; 7(7):1361-71. PubMed ID: 10465410
[TBL] [Abstract][Full Text] [Related]
20. HIV-1 TAR RNA enhances the interaction between Tat and cyclin T1.
Zhang J; Tamilarasu N; Hwang S; Garber ME; Huq I; Jones KA; Rana TM
J Biol Chem; 2000 Nov; 275(44):34314-9. PubMed ID: 10944537
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]