292 related articles for article (PubMed ID: 14500873)
1. A consensus view of fold space: combining SCOP, CATH, and the Dali Domain Dictionary.
Day R; Beck DA; Armen RS; Daggett V
Protein Sci; 2003 Oct; 12(10):2150-60. PubMed ID: 14500873
[TBL] [Abstract][Full Text] [Related]
2. Generation of a consensus protein domain dictionary.
Schaeffer RD; Jonsson AL; Simms AM; Daggett V
Bioinformatics; 2011 Jan; 27(1):46-54. PubMed ID: 21068000
[TBL] [Abstract][Full Text] [Related]
3. Structural classification of thioredoxin-like fold proteins.
Qi Y; Grishin NV
Proteins; 2005 Feb; 58(2):376-88. PubMed ID: 15558583
[TBL] [Abstract][Full Text] [Related]
4. Automatic classification of protein structures using low-dimensional structure space mappings.
Asarnow D; Singh R
BMC Bioinformatics; 2014; 15 Suppl 2(Suppl 2):S1. PubMed ID: 24564500
[TBL] [Abstract][Full Text] [Related]
5. Impact of structure space continuity on protein fold classification.
Xu J; Zhang J
Sci Rep; 2016 Mar; 6():23263. PubMed ID: 27006112
[TBL] [Abstract][Full Text] [Related]
6. AutoSCOP: automated prediction of SCOP classifications using unique pattern-class mappings.
Gewehr JE; Hintermair V; Zimmer R
Bioinformatics; 2007 May; 23(10):1203-10. PubMed ID: 17379694
[TBL] [Abstract][Full Text] [Related]
7. Cradle-loop barrels and the concept of metafolds in protein classification by natural descent.
Alva V; Koretke KK; Coles M; Lupas AN
Curr Opin Struct Biol; 2008 Jun; 18(3):358-65. PubMed ID: 18457946
[TBL] [Abstract][Full Text] [Related]
8. Systematic comparison of SCOP and CATH: a new gold standard for protein structure analysis.
Csaba G; Birzele F; Zimmer R
BMC Struct Biol; 2009 Apr; 9():23. PubMed ID: 19374763
[TBL] [Abstract][Full Text] [Related]
9. A comparison of SCOP and CATH with respect to domain-domain interactions.
Jefferson ER; Walsh TP; Barton GJ
Proteins; 2008 Jan; 70(1):54-62. PubMed ID: 17634986
[TBL] [Abstract][Full Text] [Related]
10. Comparison of sequence and structure-based datasets for nonredundant structural data mining.
Chu CK; Feng LL; Wouters MA
Proteins; 2005 Sep; 60(4):577-83. PubMed ID: 16001417
[TBL] [Abstract][Full Text] [Related]
11. Cross-over between discrete and continuous protein structure space: insights into automatic classification and networks of protein structures.
Pascual-García A; Abia D; Ortiz AR; Bastolla U
PLoS Comput Biol; 2009 Mar; 5(3):e1000331. PubMed ID: 19325884
[TBL] [Abstract][Full Text] [Related]
12. The CATH hierarchy revisited-structural divergence in domain superfamilies and the continuity of fold space.
Cuff A; Redfern OC; Greene L; Sillitoe I; Lewis T; Dibley M; Reid A; Pearl F; Dallman T; Todd A; Garratt R; Thornton J; Orengo C
Structure; 2009 Aug; 17(8):1051-62. PubMed ID: 19679085
[TBL] [Abstract][Full Text] [Related]
13. A fully automatic evolutionary classification of protein folds: Dali Domain Dictionary version 3.
Dietmann S; Park J; Notredame C; Heger A; Lappe M; Holm L
Nucleic Acids Res; 2001 Jan; 29(1):55-7. PubMed ID: 11125048
[TBL] [Abstract][Full Text] [Related]
14. Touring protein fold space with Dali/FSSP.
Holm L; Sander C
Nucleic Acids Res; 1998 Jan; 26(1):316-9. PubMed ID: 9399863
[TBL] [Abstract][Full Text] [Related]
15. fastSCOP: a fast web server for recognizing protein structural domains and SCOP superfamilies.
Tung CH; Yang JM
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W438-43. PubMed ID: 17485476
[TBL] [Abstract][Full Text] [Related]
16. Automated assignment of SCOP and CATH protein structure classifications from FSSP scores.
Getz G; Vendruscolo M; Sachs D; Domany E
Proteins; 2002 Mar; 46(4):405-15. PubMed ID: 11835515
[TBL] [Abstract][Full Text] [Related]
17. Representing and comparing protein folds and fold families using three-dimensional shape-density representations.
Mavridis L; Ghoorah AW; Venkatraman V; Ritchie DW
Proteins; 2012 Feb; 80(2):530-45. PubMed ID: 22081520
[TBL] [Abstract][Full Text] [Related]
18. Fragnostic: walking through protein structure space.
Friedberg I; Godzik A
Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W249-51. PubMed ID: 15980462
[TBL] [Abstract][Full Text] [Related]
19. Towards an automatic classification of protein structural domains based on structural similarity.
Sam V; Tai CH; Garnier J; Gibrat JF; Lee B; Munson PJ
BMC Bioinformatics; 2008 Jan; 9():74. PubMed ID: 18237410
[TBL] [Abstract][Full Text] [Related]
20. Evaluation of protein fold comparison servers.
Novotny M; Madsen D; Kleywegt GJ
Proteins; 2004 Feb; 54(2):260-70. PubMed ID: 14696188
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
