371 related articles for article (PubMed ID: 14566052)
1. Nonlinear elasticity, proteinquakes, and the energy landscapes of functional transitions in proteins.
Miyashita O; Onuchic JN; Wolynes PG
Proc Natl Acad Sci U S A; 2003 Oct; 100(22):12570-5. PubMed ID: 14566052
[TBL] [Abstract][Full Text] [Related]
2. Conformational transitions of adenylate kinase: switching by cracking.
Whitford PC; Miyashita O; Levy Y; Onuchic JN
J Mol Biol; 2007 Mar; 366(5):1661-71. PubMed ID: 17217965
[TBL] [Abstract][Full Text] [Related]
3. Analysis of functional motions in Brownian molecular machines with an efficient block normal mode approach: myosin-II and Ca2+ -ATPase.
Li G; Cui Q
Biophys J; 2004 Feb; 86(2):743-63. PubMed ID: 14747312
[TBL] [Abstract][Full Text] [Related]
4. Simple energy landscape model for the kinetics of functional transitions in proteins.
Miyashita O; Wolynes PG; Onuchic JN
J Phys Chem B; 2005 Feb; 109(5):1959-69. PubMed ID: 16851180
[TBL] [Abstract][Full Text] [Related]
5. Folding funnels and conformational transitions via hinge-bending motions.
Kumar S; Ma B; Tsai CJ; Wolfson H; Nussinov R
Cell Biochem Biophys; 1999; 31(2):141-64. PubMed ID: 10593256
[TBL] [Abstract][Full Text] [Related]
6. How well can we understand large-scale protein motions using normal modes of elastic network models?
Yang L; Song G; Jernigan RL
Biophys J; 2007 Aug; 93(3):920-9. PubMed ID: 17483178
[TBL] [Abstract][Full Text] [Related]
7. Domain motions and the open-to-closed conformational transition of an enzyme: a normal mode analysis of S-adenosyl-L-homocysteine hydrolase.
Wang M; Borchardt RT; Schowen RL; Kuczera K
Biochemistry; 2005 May; 44(19):7228-39. PubMed ID: 15882061
[TBL] [Abstract][Full Text] [Related]
8. Multiple-basin energy landscapes for large-amplitude conformational motions of proteins: Structure-based molecular dynamics simulations.
Okazaki K; Koga N; Takada S; Onuchic JN; Wolynes PG
Proc Natl Acad Sci U S A; 2006 Aug; 103(32):11844-9. PubMed ID: 16877541
[TBL] [Abstract][Full Text] [Related]
9. Identification of key residues for protein conformational transition using elastic network model.
Su JG; Xu XJ; Li CH; Chen WZ; Wang CX
J Chem Phys; 2011 Nov; 135(17):174101. PubMed ID: 22070286
[TBL] [Abstract][Full Text] [Related]
10. Protein conformational transitions explored by mixed elastic network models.
Zheng W; Brooks BR; Hummer G
Proteins; 2007 Oct; 69(1):43-57. PubMed ID: 17596847
[TBL] [Abstract][Full Text] [Related]
11. Internal protein dynamics shifts the distance to the mechanical transition state.
West DK; Paci E; Olmsted PD
Phys Rev E Stat Nonlin Soft Matter Phys; 2006 Dec; 74(6 Pt 1):061912. PubMed ID: 17280101
[TBL] [Abstract][Full Text] [Related]
12. Exploring transition pathway and free-energy profile of large-scale protein conformational change by combining normal mode analysis and umbrella sampling molecular dynamics.
Wang J; Shao Q; Xu Z; Liu Y; Yang Z; Cossins BP; Jiang H; Chen K; Shi J; Zhu W
J Phys Chem B; 2014 Jan; 118(1):134-43. PubMed ID: 24350625
[TBL] [Abstract][Full Text] [Related]
13. Discrete breathers in nonlinear network models of proteins.
Juanico B; Sanejouand YH; Piazza F; De Los Rios P
Phys Rev Lett; 2007 Dec; 99(23):238104. PubMed ID: 18233417
[TBL] [Abstract][Full Text] [Related]
14. Computing free energy of a large-scale allosteric transition in adenylate kinase using all atom explicit solvent simulations.
Potoyan DA; Zhuravlev PI; Papoian GA
J Phys Chem B; 2012 Feb; 116(5):1709-15. PubMed ID: 22212071
[TBL] [Abstract][Full Text] [Related]
15. An NMA-guided path planning approach for computing large-amplitude conformational changes in proteins.
Kirillova S; Cortés J; Stefaniu A; Siméon T
Proteins; 2008 Jan; 70(1):131-43. PubMed ID: 17640073
[TBL] [Abstract][Full Text] [Related]
16. On the relationship between low-frequency normal modes and the large-scale conformational changes of proteins.
Mahajan S; Sanejouand YH
Arch Biochem Biophys; 2015 Feb; 567():59-65. PubMed ID: 25562404
[TBL] [Abstract][Full Text] [Related]
17. Topography of the free-energy landscape probed via mechanical unfolding of proteins.
Kirmizialtin S; Huang L; Makarov DE
J Chem Phys; 2005 Jun; 122(23):234915. PubMed ID: 16008495
[TBL] [Abstract][Full Text] [Related]
18. Local elastic constants of LacI and implications for allostery.
Ribeiro AA; Ortiz V
J Mol Graph Model; 2015 Apr; 57():106-13. PubMed ID: 25700189
[TBL] [Abstract][Full Text] [Related]
19. Characterization of enzyme motions by solution NMR relaxation dispersion.
Loria JP; Berlow RB; Watt ED
Acc Chem Res; 2008 Feb; 41(2):214-21. PubMed ID: 18281945
[TBL] [Abstract][Full Text] [Related]
20. An analysis of the influence of protein intrinsic dynamical properties on its thermal unfolding behavior.
Su JG; Xu XJ; Li CH; Chen WZ; Wang CX
J Biomol Struct Dyn; 2011 Aug; 29(1):105-21. PubMed ID: 21696228
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
