149 related articles for article (PubMed ID: 14579335)
1. TOUCHSTONE: a unified approach to protein structure prediction.
Skolnick J; Zhang Y; Arakaki AK; Kolinski A; Boniecki M; Szilágyi A; Kihara D
Proteins; 2003; 53 Suppl 6():469-79. PubMed ID: 14579335
[TBL] [Abstract][Full Text] [Related]
2. A "FRankenstein's monster" approach to comparative modeling: merging the finest fragments of Fold-Recognition models and iterative model refinement aided by 3D structure evaluation.
Kosinski J; Cymerman IA; Feder M; Kurowski MA; Sasin JM; Bujnicki JM
Proteins; 2003; 53 Suppl 6():369-79. PubMed ID: 14579325
[TBL] [Abstract][Full Text] [Related]
3. Protein structure prediction of CASP5 comparative modeling and fold recognition targets using consensus alignment approach and 3D assessment.
Ginalski K; Rychlewski L
Proteins; 2003; 53 Suppl 6():410-7. PubMed ID: 14579329
[TBL] [Abstract][Full Text] [Related]
4. Development and large scale benchmark testing of the PROSPECTOR_3 threading algorithm.
Skolnick J; Kihara D; Zhang Y
Proteins; 2004 Aug; 56(3):502-18. PubMed ID: 15229883
[TBL] [Abstract][Full Text] [Related]
5. Template-based modeling and free modeling by I-TASSER in CASP7.
Zhang Y
Proteins; 2007; 69 Suppl 8():108-17. PubMed ID: 17894355
[TBL] [Abstract][Full Text] [Related]
6. Analysis of TASSER-based CASP7 protein structure prediction results.
Zhou H; Pandit SB; Lee SY; Borreguero J; Chen H; Wroblewska L; Skolnick J
Proteins; 2007; 69 Suppl 8():90-7. PubMed ID: 17705276
[TBL] [Abstract][Full Text] [Related]
7. Benchmarking of TASSER in the ab initio limit.
Borreguero JM; Skolnick J
Proteins; 2007 Jul; 68(1):48-56. PubMed ID: 17444524
[TBL] [Abstract][Full Text] [Related]
8. Rosetta predictions in CASP5: successes, failures, and prospects for complete automation.
Bradley P; Chivian D; Meiler J; Misura KM; Rohl CA; Schief WR; Wedemeyer WJ; Schueler-Furman O; Murphy P; Schonbrun J; Strauss CE; Baker D
Proteins; 2003; 53 Suppl 6():457-68. PubMed ID: 14579334
[TBL] [Abstract][Full Text] [Related]
9. CASP5 assessment of fold recognition target predictions.
Kinch LN; Wrabl JO; Krishna SS; Majumdar I; Sadreyev RI; Qi Y; Pei J; Cheng H; Grishin NV
Proteins; 2003; 53 Suppl 6():395-409. PubMed ID: 14579328
[TBL] [Abstract][Full Text] [Related]
10. Predicting interresidue contacts using templates and pathways.
Shao Y; Bystroff C
Proteins; 2003; 53 Suppl 6():497-502. PubMed ID: 14579339
[TBL] [Abstract][Full Text] [Related]
11. Combining local-structure, fold-recognition, and new fold methods for protein structure prediction.
Karplus K; Karchin R; Draper J; Casper J; Mandel-Gutfreund Y; Diekhans M; Hughey R
Proteins; 2003; 53 Suppl 6():491-6. PubMed ID: 14579338
[TBL] [Abstract][Full Text] [Related]
12. Predictions without templates: new folds, secondary structure, and contacts in CASP5.
Aloy P; Stark A; Hadley C; Russell RB
Proteins; 2003; 53 Suppl 6():436-56. PubMed ID: 14579333
[TBL] [Abstract][Full Text] [Related]
13. Domain definition and target classification for CASP7.
Clarke ND; Ezkurdia I; Kopp J; Read RJ; Schwede T; Tress M
Proteins; 2007; 69 Suppl 8():10-8. PubMed ID: 17654725
[TBL] [Abstract][Full Text] [Related]
14. MULTIPROSPECTOR: an algorithm for the prediction of protein-protein interactions by multimeric threading.
Lu L; Lu H; Skolnick J
Proteins; 2002 Nov; 49(3):350-64. PubMed ID: 12360525
[TBL] [Abstract][Full Text] [Related]
15. Development and benchmarking of TASSER(iter) for the iterative improvement of protein structure predictions.
Lee SY; Skolnick J
Proteins; 2007 Jul; 68(1):39-47. PubMed ID: 17469193
[TBL] [Abstract][Full Text] [Related]
16. Assessment of domain boundary predictions and the prediction of intramolecular contacts in CASP8.
Ezkurdia I; Graña O; Izarzugaza JM; Tress ML
Proteins; 2009; 77 Suppl 9():196-209. PubMed ID: 19714769
[TBL] [Abstract][Full Text] [Related]
17. Assessment of CASP7 predictions in the high accuracy template-based modeling category.
Read RJ; Chavali G
Proteins; 2007; 69 Suppl 8():27-37. PubMed ID: 17894351
[TBL] [Abstract][Full Text] [Related]
18. Structure prediction for CASP7 targets using extensive all-atom refinement with Rosetta@home.
Das R; Qian B; Raman S; Vernon R; Thompson J; Bradley P; Khare S; Tyka MD; Bhat D; Chivian D; Kim DE; Sheffler WH; Malmström L; Wollacott AM; Wang C; Andre I; Baker D
Proteins; 2007; 69 Suppl 8():118-28. PubMed ID: 17894356
[TBL] [Abstract][Full Text] [Related]
19. TOUCHSTONE II: a new approach to ab initio protein structure prediction.
Zhang Y; Kolinski A; Skolnick J
Biophys J; 2003 Aug; 85(2):1145-64. PubMed ID: 12885659
[TBL] [Abstract][Full Text] [Related]
20. Estimating quality of template-based protein models by alignment stability.
Chen H; Kihara D
Proteins; 2008 May; 71(3):1255-74. PubMed ID: 18041762
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]