90 related articles for article (PubMed ID: 14594713)
1. Markovian negentropies in bioinformatics. 1. A picture of footprints after the interaction of the HIV-1 Psi-RNA packaging region with drugs.
Díaz HG; de Armas RR; Molina R
Bioinformatics; 2003 Nov; 19(16):2079-87. PubMed ID: 14594713
[TBL] [Abstract][Full Text] [Related]
2. Vibrational Markovian modelling of footprints after the interaction of antibiotics with the packaging region of HIV type 1.
Díaz HG; de Armas RR; Molina R
Bull Math Biol; 2003 Nov; 65(6):991-1002. PubMed ID: 14607285
[TBL] [Abstract][Full Text] [Related]
3. Linear indices of the 'macromolecular graph's nucleotides adjacency matrix' as a promising approach for bioinformatics studies. Part 1: prediction of paromomycin's affinity constant with HIV-1 psi-RNA packaging region.
Marrero Ponce Y; Castillo Garit JA; Nodarse D
Bioorg Med Chem; 2005 May; 13(10):3397-404. PubMed ID: 15848751
[TBL] [Abstract][Full Text] [Related]
4. Drug-RNA footprinting.
McPike MP; Goodisman J; Dabrowiak JC
Methods Enzymol; 2001; 340():431-49. PubMed ID: 11494862
[TBL] [Abstract][Full Text] [Related]
5. Nucleotide's bilinear indices: novel bio-macromolecular descriptors for bioinformatics studies of nucleic acids. I. Prediction of paromomycin's affinity constant with HIV-1 Psi-RNA packaging region.
Marrero-Ponce Y; Ortega-Broche SE; Díaz YE; Alvarado YJ; Cubillan N; Cardoso GC; Torrens F; Pérez-Giménez F
J Theor Biol; 2009 Jul; 259(2):229-41. PubMed ID: 19272394
[TBL] [Abstract][Full Text] [Related]
6. Footprinting and circular dichroism studies on paromomycin binding to the packaging region of human immunodeficiency virus type-1.
McPike MP; Goodisman J; Dabrowiak JC
Bioorg Med Chem; 2002 Nov; 10(11):3663-72. PubMed ID: 12213482
[TBL] [Abstract][Full Text] [Related]
7. Specificity of neomycin analogues bound to the packaging region of human immunodeficiency virus type 1 RNA.
McPike MP; Goodisman J; Dabrowiak JC
Bioorg Med Chem; 2004 Apr; 12(8):1835-43. PubMed ID: 15051052
[TBL] [Abstract][Full Text] [Related]
8. Markovian Backbone Negentropies: Molecular descriptors for protein research. I. Predicting protein stability in Arc repressor mutants.
Ramos de Armas R; González Díaz H; Molina R; Uriarte E
Proteins; 2004 Sep; 56(4):715-23. PubMed ID: 15281125
[TBL] [Abstract][Full Text] [Related]
9. NMR structure of the HIV-1 nucleocapsid protein bound to stem-loop SL2 of the psi-RNA packaging signal. Implications for genome recognition.
Amarasinghe GK; De Guzman RN; Turner RB; Chancellor KJ; Wu ZR; Summers MF
J Mol Biol; 2000 Aug; 301(2):491-511. PubMed ID: 10926523
[TBL] [Abstract][Full Text] [Related]
10. Fluorescent HIV-1 Dimerization Initiation Site: design, properties, and use for ligand discovery.
Tam VK; Kwong D; Tor Y
J Am Chem Soc; 2007 Mar; 129(11):3257-66. PubMed ID: 17319662
[TBL] [Abstract][Full Text] [Related]
11. Cooperative and specific binding of Vif to the 5' region of HIV-1 genomic RNA.
Henriet S; Richer D; Bernacchi S; Decroly E; Vigne R; Ehresmann B; Ehresmann C; Paillart JC; Marquet R
J Mol Biol; 2005 Nov; 354(1):55-72. PubMed ID: 16236319
[TBL] [Abstract][Full Text] [Related]
12. Minimum sequence requirements for the binding of paromomycin to the rRNA decoding site A.
Anderson PC; Mecozzi S
Biopolymers; 2007 Jun; 86(2):95-111. PubMed ID: 17323326
[TBL] [Abstract][Full Text] [Related]
13. 2-aminopurine fluorescence: discrimination between specific and unspecific ligand binding to the kissing-loop dimer of the HIV-1 RNA.
Kaluzhny DN; Beniaminov AD; Minyat EE
J Biomol Struct Dyn; 2008 Jun; 25(6):663-7. PubMed ID: 18399700
[TBL] [Abstract][Full Text] [Related]
14. Footprinting, circular dichroism and UV melting studies on neomycin B binding to the packaging region of human immunodeficiency virus type-1 RNA.
McPike MP; Sullivan JM; Goodisman J; Dabrowiak JC
Nucleic Acids Res; 2002 Jul; 30(13):2825-31. PubMed ID: 12087166
[TBL] [Abstract][Full Text] [Related]
15. HIV-1(Lai) genomic RNA: combined used of NMR and molecular dynamics simulation for studying the structure and internal dynamics of a mutated SL1 hairpin.
Kieken F; Arnoult E; Barbault F; Paquet F; Huynh-Dinh T; Paoletti J; Genest D; Lancelot G
Eur Biophys J; 2002 Dec; 31(7):521-31. PubMed ID: 12451421
[TBL] [Abstract][Full Text] [Related]
16. Specificity of aminoglycoside binding to RNA constructs derived from the 16S rRNA decoding region and the HIV-RRE activator region.
Wang Y; Hamasaki K; Rando RR
Biochemistry; 1997 Jan; 36(4):768-79. PubMed ID: 9020774
[TBL] [Abstract][Full Text] [Related]
17. Accurate prediction of HIV-1 drug response from the reverse transcriptase and protease amino acid sequences using sparse models created by convex optimization.
Rabinowitz M; Myers L; Banjevic M; Chan A; Sweetkind-Singer J; Haberer J; McCann K; Wolkowicz R
Bioinformatics; 2006 Mar; 22(5):541-9. PubMed ID: 16368772
[TBL] [Abstract][Full Text] [Related]
18. [The interaction of dimeric form of RNA retroviruses with paromomycin and magnesium: using the fluorescence of 2-aminopurine].
Kaliuzhnyĭ DN; Miniat EG
Mol Biol (Mosk); 2009; 43(4):675-81. PubMed ID: 19807031
[TBL] [Abstract][Full Text] [Related]
19. 2D RNA-QSAR: assigning ACC oxidase family membership with stochastic molecular descriptors; isolation and prediction of a sequence from Psidium guajava L.
González-Díaz H; Agüero-Chapin G; Varona-Santos J; Molina R; de la Riva G; Uriarte E
Bioorg Med Chem Lett; 2005 Jun; 15(11):2932-7. PubMed ID: 15878661
[TBL] [Abstract][Full Text] [Related]
20. Identification of specific small molecule ligands for stem loop 3 ribonucleic acid of the packaging signal Psi of human immunodeficiency virus-1.
Warui DM; Baranger AM
J Med Chem; 2009 Sep; 52(17):5462-73. PubMed ID: 19691339
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]