228 related articles for article (PubMed ID: 14602917)
1. Deleterious mutation prediction in the secondary structure of RNAs.
Barash D
Nucleic Acids Res; 2003 Nov; 31(22):6578-84. PubMed ID: 14602917
[TBL] [Abstract][Full Text] [Related]
2. Second eigenvalue of the Laplacian matrix for predicting RNA conformational switch by mutation.
Barash D
Bioinformatics; 2004 Aug; 20(12):1861-9. PubMed ID: 14988109
[TBL] [Abstract][Full Text] [Related]
3. An efficient method for the prediction of deleterious multiple-point mutations in the secondary structure of RNAs using suboptimal folding solutions.
Churkin A; Barash D
BMC Bioinformatics; 2008 Apr; 9():222. PubMed ID: 18445289
[TBL] [Abstract][Full Text] [Related]
4. Prediction of alternative RNA secondary structures based on fluctuating thermodynamic parameters.
Le SY; Chen JH; Maizel JV
Nucleic Acids Res; 1993 May; 21(9):2173-8. PubMed ID: 7684834
[TBL] [Abstract][Full Text] [Related]
5. RNAmute: RNA secondary structure mutation analysis tool.
Churkin A; Barash D
BMC Bioinformatics; 2006 Apr; 7():221. PubMed ID: 16638137
[TBL] [Abstract][Full Text] [Related]
6. Mutational analysis in RNAs: comparing programs for RNA deleterious mutation prediction.
Barash D; Churkin A
Brief Bioinform; 2011 Mar; 12(2):104-14. PubMed ID: 21422070
[TBL] [Abstract][Full Text] [Related]
7. Sampled ensemble neutrality as a feature to classify potential structured RNAs.
Pei S; Anthony JS; Meyer MM
BMC Genomics; 2015 Feb; 16(1):35. PubMed ID: 25649229
[TBL] [Abstract][Full Text] [Related]
8. Spectral decomposition for the search and analysis of RNA secondary structure.
Barash D
J Comput Biol; 2004; 11(6):1169-74. PubMed ID: 15662204
[TBL] [Abstract][Full Text] [Related]
9. A tertiary structural element in S box leader RNAs is required for S-adenosylmethionine-directed transcription termination.
McDaniel BA; Grundy FJ; Henkin TM
Mol Microbiol; 2005 Aug; 57(4):1008-21. PubMed ID: 16091040
[TBL] [Abstract][Full Text] [Related]
10. IndelsRNAmute: predicting deleterious multiple point substitutions and indels mutations.
Churkin A; Ponty Y; Barash D
BMC Bioinformatics; 2022 Oct; 23(Suppl 8):424. PubMed ID: 36241988
[TBL] [Abstract][Full Text] [Related]
11. Predicting common foldings of homologous RNAs.
Le SY; Zuker M
J Biomol Struct Dyn; 1991 Apr; 8(5):1027-44. PubMed ID: 1715169
[TBL] [Abstract][Full Text] [Related]
12. Monovalent ion-mediated folding of the Tetrahymena thermophila ribozyme.
Shcherbakova I; Gupta S; Chance MR; Brenowitz M
J Mol Biol; 2004 Oct; 342(5):1431-42. PubMed ID: 15364572
[TBL] [Abstract][Full Text] [Related]
13. RNA folding causes secondary structure rearrangement.
Wu M; Tinoco I
Proc Natl Acad Sci U S A; 1998 Sep; 95(20):11555-60. PubMed ID: 9751704
[TBL] [Abstract][Full Text] [Related]
14. Detection of common motifs in RNA secondary structures.
Margalit H; Shapiro BA; Oppenheim AB; Maizel JV
Nucleic Acids Res; 1989 Jun; 17(12):4829-45. PubMed ID: 2473442
[TBL] [Abstract][Full Text] [Related]
15. Efficient algorithms for probing the RNA mutation landscape.
WaldispĆ¼hl J; Devadas S; Berger B; Clote P
PLoS Comput Biol; 2008 Aug; 4(8):e1000124. PubMed ID: 18688270
[TBL] [Abstract][Full Text] [Related]
16. STR2: a structure to string approach for locating G-box riboswitch shapes in pre-selected genes.
Bergig O; Barash D; Nudler E; Kedem K
In Silico Biol; 2004; 4(4):593-604. PubMed ID: 15752075
[TBL] [Abstract][Full Text] [Related]
17. Dynamic programming algorithms for RNA structure prediction with binding sites.
Poolsap U; Kato Y; Akutsu T
Pac Symp Biocomput; 2010; ():98-107. PubMed ID: 19908362
[TBL] [Abstract][Full Text] [Related]
18. An RNA folding method capable of identifying pseudoknots and base triples.
Tabaska JE; Cary RB; Gabow HN; Stormo GD
Bioinformatics; 1998; 14(8):691-9. PubMed ID: 9789095
[TBL] [Abstract][Full Text] [Related]
19. Prediction of RNA secondary structure based on helical regions distribution.
WuJu L; JiaJin W
Bioinformatics; 1998; 14(8):700-6. PubMed ID: 9790689
[TBL] [Abstract][Full Text] [Related]
20. A general method for rapid and nondenaturing purification of RNAs.
Kieft JS; Batey RT
RNA; 2004 Jun; 10(6):988-95. PubMed ID: 15146082
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]