These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
5. Finding similar nucleotide sequences using network BLAST searches. Ladunga I Curr Protoc Bioinformatics; 2009 Jun; Chapter 3():3.3.1-3.3.26. PubMed ID: 19496060 [TBL] [Abstract][Full Text] [Related]
6. Finding Similar Nucleotide Sequences Using Network BLAST Searches. Ladunga I Curr Protoc Bioinformatics; 2017 Jun; 58():3.3.1-3.3.25. PubMed ID: 28654728 [TBL] [Abstract][Full Text] [Related]
7. iBLAST: Incremental BLAST of new sequences via automated e-value correction. Dash S; Rahman SR; Hines HM; Feng WC PLoS One; 2021; 16(4):e0249410. PubMed ID: 33886589 [TBL] [Abstract][Full Text] [Related]
8. Adaptive seeds tame genomic sequence comparison. Kiełbasa SM; Wan R; Sato K; Horton P; Frith MC Genome Res; 2011 Mar; 21(3):487-93. PubMed ID: 21209072 [TBL] [Abstract][Full Text] [Related]
9. Efficient recognition of protein fold at low sequence identity by conservative application of Psi-BLAST: validation. Stevens FJ J Mol Recognit; 2005; 18(2):139-49. PubMed ID: 15558595 [TBL] [Abstract][Full Text] [Related]
10. Comparing compressed sequences for faster nucleotide BLAST searches. Cameron M; Williams HE IEEE/ACM Trans Comput Biol Bioinform; 2007; 4(3):349-64. PubMed ID: 17666756 [TBL] [Abstract][Full Text] [Related]
11. BLAST and FASTA similarity searching for multiple sequence alignment. Pearson WR Methods Mol Biol; 2014; 1079():75-101. PubMed ID: 24170396 [TBL] [Abstract][Full Text] [Related]
12. NCBI Genome Workbench: Desktop Software for Comparative Genomics, Visualization, and GenBank Data Submission. Kuznetsov A; Bollin CJ Methods Mol Biol; 2021; 2231():261-295. PubMed ID: 33289898 [TBL] [Abstract][Full Text] [Related]
13. Efficient computation of spaced seeds. Ilie S BMC Res Notes; 2012 Feb; 5():123. PubMed ID: 22373455 [TBL] [Abstract][Full Text] [Related]
14. Ballast: blast post-processing based on locally conserved segments. Plewniak F; Thompson JD; Poch O Bioinformatics; 2000 Sep; 16(9):750-9. PubMed ID: 11108697 [TBL] [Abstract][Full Text] [Related]
15. Comparison of methods for genomic localization of gene trap sequences. Harper CA; Huang CC; Stryke D; Kawamoto M; Ferrin TE; Babbitt PC BMC Genomics; 2006 Sep; 7():236. PubMed ID: 16982004 [TBL] [Abstract][Full Text] [Related]
16. SS-Wrapper: a package of wrapper applications for similarity searches on Linux clusters. Wang C; Lefkowitz EJ BMC Bioinformatics; 2004 Oct; 5():171. PubMed ID: 15511296 [TBL] [Abstract][Full Text] [Related]
17. Designing multiple simultaneous seeds for DNA similarity search. Sun Y; Buhler J J Comput Biol; 2005; 12(6):847-61. PubMed ID: 16108721 [TBL] [Abstract][Full Text] [Related]
18. Sequence similarity searching using the BLAST family of programs. Wolfsberg TG; Madden TL Curr Protoc Mol Biol; 2001 May; Chapter 19():Unit 19.3. PubMed ID: 18265177 [TBL] [Abstract][Full Text] [Related]
19. A Simplified Description of Child Tables for Sequence Similarity Search. Frith MC; Shrestha AMS IEEE/ACM Trans Comput Biol Bioinform; 2018; 15(6):2067-2073. PubMed ID: 29994365 [TBL] [Abstract][Full Text] [Related]
20. Designing sensitive and specific spaced seeds for cross-species mRNA-to-genome alignment. Zhou L; Florea L J Comput Biol; 2007 Mar; 14(2):113-30. PubMed ID: 17456011 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]