These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
256 related articles for article (PubMed ID: 14642655)
1. Improved Hidden Markov Model training for multiple sequence alignment by a particle swarm optimization-evolutionary algorithm hybrid. Rasmussen TK; Krink T Biosystems; 2003 Nov; 72(1-2):5-17. PubMed ID: 14642655 [TBL] [Abstract][Full Text] [Related]
2. Multiple Sequence Alignment with Hidden Markov Models Learned by Random Drift Particle Swarm Optimization. Sun J; Palade V; Wu X; Fang W IEEE/ACM Trans Comput Biol Bioinform; 2014; 11(1):243-57. PubMed ID: 26355522 [TBL] [Abstract][Full Text] [Related]
3. Using guide trees to construct multiple-sequence evolutionary HMMs. Holmes I Bioinformatics; 2003; 19 Suppl 1():i147-57. PubMed ID: 12855451 [TBL] [Abstract][Full Text] [Related]
4. ProbPFP: a multiple sequence alignment algorithm combining hidden Markov model optimized by particle swarm optimization with partition function. Zhan Q; Wang N; Jin S; Tan R; Jiang Q; Wang Y BMC Bioinformatics; 2019 Nov; 20(Suppl 18):573. PubMed ID: 31760933 [TBL] [Abstract][Full Text] [Related]
5. Training HMM structure with genetic algorithm for biological sequence analysis. Won KJ; Prügel-Bennett A; Krogh A Bioinformatics; 2004 Dec; 20(18):3613-9. PubMed ID: 15297297 [TBL] [Abstract][Full Text] [Related]
6. HMM-ModE--improved classification using profile hidden Markov models by optimising the discrimination threshold and modifying emission probabilities with negative training sequences. Srivastava PK; Desai DK; Nandi S; Lynn AM BMC Bioinformatics; 2007 Mar; 8():104. PubMed ID: 17389042 [TBL] [Abstract][Full Text] [Related]
7. A linear memory algorithm for Baum-Welch training. Miklós I; Meyer IM BMC Bioinformatics; 2005 Sep; 6():231. PubMed ID: 16171529 [TBL] [Abstract][Full Text] [Related]
8. COACH: profile-profile alignment of protein families using hidden Markov models. Edgar RC; Sjölander K Bioinformatics; 2004 May; 20(8):1309-18. PubMed ID: 14962937 [TBL] [Abstract][Full Text] [Related]
9. HMM-Kalign: a tool for generating sub-optimal HMM alignments. Becker E; Cotillard A; Meyer V; Madaoui H; Guérois R Bioinformatics; 2007 Nov; 23(22):3095-7. PubMed ID: 17921492 [TBL] [Abstract][Full Text] [Related]
10. Hidden Markov models incorporating fuzzy measures and integrals for protein sequence identification and alignment. Bidargaddi NP; Chetty M; Kamruzzaman J Genomics Proteomics Bioinformatics; 2008 Jun; 6(2):98-110. PubMed ID: 18973866 [TBL] [Abstract][Full Text] [Related]
11. Hybrid simulated annealing and its application to optimization of hidden Markov models for visual speech recognition. Lee JS; Park CH IEEE Trans Syst Man Cybern B Cybern; 2010 Aug; 40(4):1188-96. PubMed ID: 20064758 [TBL] [Abstract][Full Text] [Related]
12. SATCHMO: sequence alignment and tree construction using hidden Markov models. Edgar RC; Sjölander K Bioinformatics; 2003 Jul; 19(11):1404-11. PubMed ID: 12874053 [TBL] [Abstract][Full Text] [Related]
13. Automated protein subfamily identification and classification. Brown DP; Krishnamurthy N; Sjölander K PLoS Comput Biol; 2007 Aug; 3(8):e160. PubMed ID: 17708678 [TBL] [Abstract][Full Text] [Related]
14. Binary particle swarm optimization algorithm with mutation for multiple sequence alignment. Long HX; Xu WB; Sun J Riv Biol; 2009; 102(1):75-94. PubMed ID: 19718624 [TBL] [Abstract][Full Text] [Related]
15. Implementing EM and Viterbi algorithms for Hidden Markov Model in linear memory. Churbanov A; Winters-Hilt S BMC Bioinformatics; 2008 Apr; 9():224. PubMed ID: 18447951 [TBL] [Abstract][Full Text] [Related]
16. A hidden Markov model for progressive multiple alignment. Löytynoja A; Milinkovitch MC Bioinformatics; 2003 Aug; 19(12):1505-13. PubMed ID: 12912831 [TBL] [Abstract][Full Text] [Related]
17. Hidden Markov models in computational biology. Applications to protein modeling. Krogh A; Brown M; Mian IS; Sjölander K; Haussler D J Mol Biol; 1994 Feb; 235(5):1501-31. PubMed ID: 8107089 [TBL] [Abstract][Full Text] [Related]
18. Alignment of multiple proteins with an ensemble of hidden Markov models. Song J; Liu C; Song Y; Qu J; Hura GS Int J Data Min Bioinform; 2010; 4(1):60-71. PubMed ID: 20376922 [TBL] [Abstract][Full Text] [Related]
19. Multiple protein sequence alignment with MSAProbs. Liu Y; Schmidt B Methods Mol Biol; 2014; 1079():211-8. PubMed ID: 24170405 [TBL] [Abstract][Full Text] [Related]
20. Hidden Markov models of biological primary sequence information. Baldi P; Chauvin Y; Hunkapiller T; McClure MA Proc Natl Acad Sci U S A; 1994 Feb; 91(3):1059-63. PubMed ID: 8302831 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]