101 related articles for article (PubMed ID: 14642656)
1. Evolutionary computation method for pattern recognition of cis-acting sites.
Howard D; Benson K
Biosystems; 2003 Nov; 72(1-2):19-27. PubMed ID: 14642656
[TBL] [Abstract][Full Text] [Related]
2. Sequence alignment kernel for recognition of promoter regions.
Gordon L; Chervonenkis AY; Gammerman AJ; Shahmuradov IA; Solovyev VV
Bioinformatics; 2003 Oct; 19(15):1964-71. PubMed ID: 14555630
[TBL] [Abstract][Full Text] [Related]
3. ProSOM: core promoter prediction based on unsupervised clustering of DNA physical profiles.
Abeel T; Saeys Y; Rouzé P; Van de Peer Y
Bioinformatics; 2008 Jul; 24(13):i24-31. PubMed ID: 18586720
[TBL] [Abstract][Full Text] [Related]
4. Comparing expression profiles of genes with similar promoter regions.
Park PJ; Butte AJ; Kohane IS
Bioinformatics; 2002 Dec; 18(12):1576-84. PubMed ID: 12490441
[TBL] [Abstract][Full Text] [Related]
5. Rank order metrics for quantifying the association of sequence features with gene regulation.
Clarke ND; Granek JA
Bioinformatics; 2003 Jan; 19(2):212-8. PubMed ID: 12538241
[TBL] [Abstract][Full Text] [Related]
6. Analysis of consensus sequence patterns in Giardia cytoskeleton gene promoters.
Holberton DV; Marshall J
Nucleic Acids Res; 1995 Aug; 23(15):2945-53. PubMed ID: 7659516
[TBL] [Abstract][Full Text] [Related]
7. A small automaton for word recognition in DNA sequences and its application to consensus analysis of regulatory elements in DNA regions controlling gene expression.
Lefèvre C; Ikeda JE
Proc Int Conf Intell Syst Mol Biol; 1993; 1():243-50. PubMed ID: 7584342
[TBL] [Abstract][Full Text] [Related]
8. Defining the plasticity of transcription factor binding sites by Deconstructing DNA consensus sequences: the PhoP-binding sites among gamma/enterobacteria.
Harari O; Park SY; Huang H; Groisman EA; Zwir I
PLoS Comput Biol; 2010 Jul; 6(7):e1000862. PubMed ID: 20661307
[TBL] [Abstract][Full Text] [Related]
9. TFBScluster: a resource for the characterization of transcriptional regulatory networks.
Donaldson IJ; Chapman M; Göttgens B
Bioinformatics; 2005 Jul; 21(13):3058-9. PubMed ID: 15855248
[TBL] [Abstract][Full Text] [Related]
10. Enrichment of transcriptional regulatory sites in non-coding genomic region.
Xue W; Wang J; Shen Z; Zhu H
Bioinformatics; 2004 Mar; 20(4):569-75. PubMed ID: 14990453
[TBL] [Abstract][Full Text] [Related]
11. Efficient filtering methods for clustering cDNAs with spliced sequence alignment.
Shibuya T; Kashima H; Konagaya A
Bioinformatics; 2004 Jan; 20(1):29-39. PubMed ID: 14693805
[TBL] [Abstract][Full Text] [Related]
12. Consensus promoter identification in the human genome utilizing expressed gene markers and gene modeling.
Liu R; States DJ
Genome Res; 2002 Mar; 12(3):462-9. PubMed ID: 11875035
[TBL] [Abstract][Full Text] [Related]
13. Learning probabilistic models of cis-regulatory modules that represent logical and spatial aspects.
Noto K; Craven M
Bioinformatics; 2007 Jan; 23(2):e156-62. PubMed ID: 17237085
[TBL] [Abstract][Full Text] [Related]
14. Sequence features of DNA binding sites reveal structural class of associated transcription factor.
Narlikar L; Hartemink AJ
Bioinformatics; 2006 Jan; 22(2):157-63. PubMed ID: 16267080
[TBL] [Abstract][Full Text] [Related]
15. Approximate matching of structured motifs in DNA sequences.
El-Mabrouk N; Raffinot M; Duchesne JE; Lajoie M; Luc N
J Bioinform Comput Biol; 2005 Apr; 3(2):317-42. PubMed ID: 15852508
[TBL] [Abstract][Full Text] [Related]
16. A unifying framework for seed sensitivity and its application to subset seeds.
Kucherov G; Noé L; Roytberg M
J Bioinform Comput Biol; 2006 Apr; 4(2):553-69. PubMed ID: 16819802
[TBL] [Abstract][Full Text] [Related]
17. Extracting relations between promoter sequences and their strengths from microarray data.
Kiryu H; Oshima T; Asai K
Bioinformatics; 2005 Apr; 21(7):1062-8. PubMed ID: 15513998
[TBL] [Abstract][Full Text] [Related]
18. MatInspector and beyond: promoter analysis based on transcription factor binding sites.
Cartharius K; Frech K; Grote K; Klocke B; Haltmeier M; Klingenhoff A; Frisch M; Bayerlein M; Werner T
Bioinformatics; 2005 Jul; 21(13):2933-42. PubMed ID: 15860560
[TBL] [Abstract][Full Text] [Related]
19. Detection and validation of single gene inversions.
Lefebvre JF; El-Mabrouk N; Tillier E; Sankoff D
Bioinformatics; 2003; 19 Suppl 1():i190-6. PubMed ID: 12855457
[TBL] [Abstract][Full Text] [Related]
20. Introduction to comparing large sequence sets.
Page RD
Curr Protoc Bioinformatics; 2003 Feb; Chapter 10():Unit 10.1. PubMed ID: 18428691
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
