These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

346 related articles for article (PubMed ID: 14660683)

  • 1. Phylogenetic estimation of context-dependent substitution rates by maximum likelihood.
    Siepel A; Haussler D
    Mol Biol Evol; 2004 Mar; 21(3):468-88. PubMed ID: 14660683
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Bayesian coestimation of phylogeny and sequence alignment.
    Lunter G; Miklós I; Drummond A; Jensen JL; Hein J
    BMC Bioinformatics; 2005 Apr; 6():83. PubMed ID: 15804354
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Markov-Modulated Continuous-Time Markov Chains to Identify Site- and Branch-Specific Evolutionary Variation in BEAST.
    Baele G; Gill MS; Bastide P; Lemey P; Suchard MA
    Syst Biol; 2021 Jan; 70(1):181-189. PubMed ID: 32415977
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Composite likelihood modeling of neighboring site correlations of DNA sequence substitution rates.
    Deng L; Moore DF
    Stat Appl Genet Mol Biol; 2009; 8():Article 6. PubMed ID: 19222389
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Comparison of models for nucleotide substitution used in maximum-likelihood phylogenetic estimation.
    Yang Z; Goldman N; Friday A
    Mol Biol Evol; 1994 Mar; 11(2):316-24. PubMed ID: 8170371
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Pitfalls of the most commonly used models of context dependent substitution.
    Lindsay H; Yap VB; Ying H; Huttley GA
    Biol Direct; 2008 Dec; 3():52. PubMed ID: 19087239
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Pseudo-likelihood analysis of codon substitution models with neighbor-dependent rates.
    Christensen OF; Hobolth A; Jensen JL
    J Comput Biol; 2005 Nov; 12(9):1166-82. PubMed ID: 16305327
    [TBL] [Abstract][Full Text] [Related]  

  • 8. A class frequency mixture model that adjusts for site-specific amino acid frequencies and improves inference of protein phylogeny.
    Wang HC; Li K; Susko E; Roger AJ
    BMC Evol Biol; 2008 Dec; 8():331. PubMed ID: 19087270
    [TBL] [Abstract][Full Text] [Related]  

  • 9. CodonTest: modeling amino acid substitution preferences in coding sequences.
    Delport W; Scheffler K; Botha G; Gravenor MB; Muse SV; Kosakovsky Pond SL
    PLoS Comput Biol; 2010 Aug; 6(8):. PubMed ID: 20808876
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Pseudo-likelihood for non-reversible nucleotide substitution models with neighbour dependent rates.
    Christensen OF
    Stat Appl Genet Mol Biol; 2006; 5():Article18. PubMed ID: 17049029
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Jump-Chain Simulation of Markov Substitution Processes Over Phylogenies.
    Laurin-Lemay S; Dickson K; Rodrigue N
    J Mol Evol; 2022 Aug; 90(3-4):239-243. PubMed ID: 35652926
    [TBL] [Abstract][Full Text] [Related]  

  • 12. An amino acid substitution-selection model adjusts residue fitness to improve phylogenetic estimation.
    Wang HC; Susko E; Roger AJ
    Mol Biol Evol; 2014 Apr; 31(4):779-92. PubMed ID: 24441033
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Detection of recombination in DNA multiple alignments with hidden Markov models.
    Husmeier D; Wright F
    J Comput Biol; 2001; 8(4):401-27. PubMed ID: 11571075
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Combining phylogenetic and hidden Markov models in biosequence analysis.
    Siepel A; Haussler D
    J Comput Biol; 2004; 11(2-3):413-28. PubMed ID: 15285899
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Modelling the ancestral sequence distribution and model frequencies in context-dependent models for primate non-coding sequences.
    Baele G; Van de Peer Y; Vansteelandt S
    BMC Evol Biol; 2010 Aug; 10():244. PubMed ID: 20698960
    [TBL] [Abstract][Full Text] [Related]  

  • 16. A model-based approach to study nearest-neighbor influences reveals complex substitution patterns in non-coding sequences.
    Baele G; Van de Peer Y; Vansteelandt S
    Syst Biol; 2008 Oct; 57(5):675-92. PubMed ID: 18853356
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Taking variation of evolutionary rates between sites into account in inferring phylogenies.
    Felsenstein J
    J Mol Evol; 2001; 53(4-5):447-55. PubMed ID: 11675604
    [TBL] [Abstract][Full Text] [Related]  

  • 18. An expectation maximization algorithm for training hidden substitution models.
    Holmes I; Rubin GM
    J Mol Biol; 2002 Apr; 317(5):753-64. PubMed ID: 11955022
    [TBL] [Abstract][Full Text] [Related]  

  • 19. CodonPhyML: fast maximum likelihood phylogeny estimation under codon substitution models.
    Gil M; Zanetti MS; Zoller S; Anisimova M
    Mol Biol Evol; 2013 Jun; 30(6):1270-80. PubMed ID: 23436912
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Relating physicochemical properties of amino acids to variable nucleotide substitution patterns among sites.
    Yang Z
    Pac Symp Biocomput; 2000; ():81-92. PubMed ID: 10902158
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 18.