BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

189 related articles for article (PubMed ID: 14681389)

  • 1. SCOR: Structural Classification of RNA, version 2.0.
    Tamura M; Hendrix DK; Klosterman PS; Schimmelman NR; Brenner SE; Holbrook SR
    Nucleic Acids Res; 2004 Jan; 32(Database issue):D182-4. PubMed ID: 14681389
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Three-dimensional motifs from the SCOR, structural classification of RNA database: extruded strands, base triples, tetraloops and U-turns.
    Klosterman PS; Hendrix DK; Tamura M; Holbrook SR; Brenner SE
    Nucleic Acids Res; 2004; 32(8):2342-52. PubMed ID: 15121895
    [TBL] [Abstract][Full Text] [Related]  

  • 3. SCOR: a Structural Classification of RNA database.
    Klosterman PS; Tamura M; Holbrook SR; Brenner SE
    Nucleic Acids Res; 2002 Jan; 30(1):392-4. PubMed ID: 11752346
    [TBL] [Abstract][Full Text] [Related]  

  • 4. MeRNA: a database of metal ion binding sites in RNA structures.
    Stefan LR; Zhang R; Levitan AG; Hendrix DK; Brenner SE; Holbrook SR
    Nucleic Acids Res; 2006 Jan; 34(Database issue):D131-4. PubMed ID: 16381830
    [TBL] [Abstract][Full Text] [Related]  

  • 5. RNAJunction: a database of RNA junctions and kissing loops for three-dimensional structural analysis and nanodesign.
    Bindewald E; Hayes R; Yingling YG; Kasprzak W; Shapiro BA
    Nucleic Acids Res; 2008 Jan; 36(Database issue):D392-7. PubMed ID: 17947325
    [TBL] [Abstract][Full Text] [Related]  

  • 6. RR3DD: an RNA global structure-based RNA three-dimensional structural classification database.
    Hong X; Zheng J; Xie J; Tong X; Liu X; Song Q; Liu S; Liu S
    RNA Biol; 2021 Nov; 18(sup2):738-746. PubMed ID: 34663179
    [TBL] [Abstract][Full Text] [Related]  

  • 7. RNA FRABASE 2.0: an advanced web-accessible database with the capacity to search the three-dimensional fragments within RNA structures.
    Popenda M; Szachniuk M; Blazewicz M; Wasik S; Burke EK; Blazewicz J; Adamiak RW
    BMC Bioinformatics; 2010 May; 11():231. PubMed ID: 20459631
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Automated classification of RNA 3D motifs and the RNA 3D Motif Atlas.
    Petrov AI; Zirbel CL; Leontis NB
    RNA; 2013 Oct; 19(10):1327-40. PubMed ID: 23970545
    [TBL] [Abstract][Full Text] [Related]  

  • 9. FR3D: finding local and composite recurrent structural motifs in RNA 3D structures.
    Sarver M; Zirbel CL; Stombaugh J; Mokdad A; Leontis NB
    J Math Biol; 2008 Jan; 56(1-2):215-52. PubMed ID: 17694311
    [TBL] [Abstract][Full Text] [Related]  

  • 10. WebFR3D--a server for finding, aligning and analyzing recurrent RNA 3D motifs.
    Petrov AI; Zirbel CL; Leontis NB
    Nucleic Acids Res; 2011 Jul; 39(Web Server issue):W50-5. PubMed ID: 21515634
    [TBL] [Abstract][Full Text] [Related]  

  • 11. The RNA 3D Motif Atlas: Computational methods for extraction, organization and evaluation of RNA motifs.
    Parlea LG; Sweeney BA; Hosseini-Asanjan M; Zirbel CL; Leontis NB
    Methods; 2016 Jul; 103():99-119. PubMed ID: 27125735
    [TBL] [Abstract][Full Text] [Related]  

  • 12. RNA FRABASE version 1.0: an engine with a database to search for the three-dimensional fragments within RNA structures.
    Popenda M; Blazewicz M; Szachniuk M; Adamiak RW
    Nucleic Acids Res; 2008 Jan; 36(Database issue):D386-91. PubMed ID: 17921499
    [TBL] [Abstract][Full Text] [Related]  

  • 13. RNApdbee 2.0: multifunctional tool for RNA structure annotation.
    Zok T; Antczak M; Zurkowski M; Popenda M; Blazewicz J; Adamiak RW; Szachniuk M
    Nucleic Acids Res; 2018 Jul; 46(W1):W30-W35. PubMed ID: 29718468
    [TBL] [Abstract][Full Text] [Related]  

  • 14. The application of cluster analysis in the intercomparison of loop structures in RNA.
    Huang HC; Nagaswamy U; Fox GE
    RNA; 2005 Apr; 11(4):412-23. PubMed ID: 15769871
    [TBL] [Abstract][Full Text] [Related]  

  • 15. RNA CoSSMos 2.0: an improved searchable database of secondary structure motifs in RNA three-dimensional structures.
    Richardson KE; Kirkpatrick CC; Znosko BM
    Database (Oxford); 2020 Jan; 2020():. PubMed ID: 31950189
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Tools for the automatic identification and classification of RNA base pairs.
    Yang H; Jossinet F; Leontis N; Chen L; Westbrook J; Berman H; Westhof E
    Nucleic Acids Res; 2003 Jul; 31(13):3450-60. PubMed ID: 12824344
    [TBL] [Abstract][Full Text] [Related]  

  • 17. RNA CoSSMos: Characterization of Secondary Structure Motifs--a searchable database of secondary structure motifs in RNA three-dimensional structures.
    Vanegas PL; Hudson GA; Davis AR; Kelly SC; Kirkpatrick CC; Znosko BM
    Nucleic Acids Res; 2012 Jan; 40(Database issue):D439-44. PubMed ID: 22127861
    [TBL] [Abstract][Full Text] [Related]  

  • 18. R3D-BLAST2: an improved search tool for similar RNA 3D substructures.
    Yen CY; Lin JC; Chen KT; Lu CL
    BMC Bioinformatics; 2017 Dec; 18(Suppl 16):574. PubMed ID: 29297283
    [TBL] [Abstract][Full Text] [Related]  

  • 19. RNA structural motifs: building blocks of a modular biomolecule.
    Hendrix DK; Brenner SE; Holbrook SR
    Q Rev Biophys; 2005 Aug; 38(3):221-43. PubMed ID: 16817983
    [TBL] [Abstract][Full Text] [Related]  

  • 20. URS DataBase: universe of RNA structures and their motifs.
    Baulin E; Yacovlev V; Khachko D; Spirin S; Roytberg M
    Database (Oxford); 2016; 2016():. PubMed ID: 27242032
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.