236 related articles for article (PubMed ID: 14681390)
1. ArchDB: automated protein loop classification as a tool for structural genomics.
Espadaler J; Fernandez-Fuentes N; Hermoso A; Querol E; Aviles FX; Sternberg MJ; Oliva B
Nucleic Acids Res; 2004 Jan; 32(Database issue):D185-8. PubMed ID: 14681390
[TBL] [Abstract][Full Text] [Related]
2. Prediction of the conformation and geometry of loops in globular proteins: testing ArchDB, a structural classification of loops.
Fernandez-Fuentes N; Querol E; Aviles FX; Sternberg MJ; Oliva B
Proteins; 2005 Sep; 60(4):746-57. PubMed ID: 16021623
[TBL] [Abstract][Full Text] [Related]
3. Classification of common functional loops of kinase super-families.
Fernandez-Fuentes N; Hermoso A; Espadaler J; Querol E; Aviles FX; Oliva B
Proteins; 2004 Aug; 56(3):539-55. PubMed ID: 15229886
[TBL] [Abstract][Full Text] [Related]
4. Including Functional Annotations and Extending the Collection of Structural Classifications of Protein Loops (ArchDB).
Hermoso A; Espadaler J; Enrique Querol E; Aviles FX; Sternberg MJ; Oliva B; Fernandez-Fuentes N
Bioinform Biol Insights; 2009 Nov; 1():77-90. PubMed ID: 20066127
[TBL] [Abstract][Full Text] [Related]
5. ArchDB 2014: structural classification of loops in proteins.
Bonet J; Planas-Iglesias J; Garcia-Garcia J; Marín-López MA; Fernandez-Fuentes N; Oliva B
Nucleic Acids Res; 2014 Jan; 42(Database issue):D315-9. PubMed ID: 24265221
[TBL] [Abstract][Full Text] [Related]
6. Identification of function-associated loop motifs and application to protein function prediction.
Espadaler J; Querol E; Aviles FX; Oliva B
Bioinformatics; 2006 Sep; 22(18):2237-43. PubMed ID: 16870939
[TBL] [Abstract][Full Text] [Related]
7. PASS2: an automated database of protein alignments organised as structural superfamilies.
Bhaduri A; Pugalenthi G; Sowdhamini R
BMC Bioinformatics; 2004 Apr; 5():35. PubMed ID: 15059245
[TBL] [Abstract][Full Text] [Related]
8. Automated discovery of structural signatures of protein fold and function.
Turcotte M; Muggleton SH; Sternberg MJ
J Mol Biol; 2001 Feb; 306(3):591-605. PubMed ID: 11178916
[TBL] [Abstract][Full Text] [Related]
9. Assessing annotation transfer for genomics: quantifying the relations between protein sequence, structure and function through traditional and probabilistic scores.
Wilson CA; Kreychman J; Gerstein M
J Mol Biol; 2000 Mar; 297(1):233-49. PubMed ID: 10704319
[TBL] [Abstract][Full Text] [Related]
10. 3D-GENOMICS: a database to compare structural and functional annotations of proteins between sequenced genomes.
Fleming K; Müller A; MacCallum RM; Sternberg MJ
Nucleic Acids Res; 2004 Jan; 32(Database issue):D245-50. PubMed ID: 14681404
[TBL] [Abstract][Full Text] [Related]
11. The SUPERFAMILY database in 2004: additions and improvements.
Madera M; Vogel C; Kummerfeld SK; Chothia C; Gough J
Nucleic Acids Res; 2004 Jan; 32(Database issue):D235-9. PubMed ID: 14681402
[TBL] [Abstract][Full Text] [Related]
12. Mining super-secondary structure motifs from 3d protein structures: a sequence order independent approach.
Aung Z; Li J
Genome Inform; 2007; 19():15-26. PubMed ID: 18546501
[TBL] [Abstract][Full Text] [Related]
13. Protein structure mining using a structural alphabet.
Tyagi M; de Brevern AG; Srinivasan N; Offmann B
Proteins; 2008 May; 71(2):920-37. PubMed ID: 18004784
[TBL] [Abstract][Full Text] [Related]
14. The fragment transformation method to detect the protein structural motifs.
Lu CH; Lin YS; Chen YC; Yu CS; Chang SY; Hwang JK
Proteins; 2006 May; 63(3):636-43. PubMed ID: 16470805
[TBL] [Abstract][Full Text] [Related]
15. Protein loops on structurally similar scaffolds: database and conformational analysis.
Li W; Liu Z; Lai L
Biopolymers; 1999 May; 49(6):481-95. PubMed ID: 10193195
[TBL] [Abstract][Full Text] [Related]
16. Identification of homology in protein structure classification.
Dietmann S; Holm L
Nat Struct Biol; 2001 Nov; 8(11):953-7. PubMed ID: 11685241
[TBL] [Abstract][Full Text] [Related]
17. Structural alphabet motif discovery and a structural motif database.
Ku SY; Hu YJ
Comput Biol Med; 2012 Jan; 42(1):93-105. PubMed ID: 22099701
[TBL] [Abstract][Full Text] [Related]
18. N-terminal N-myristoylation of proteins: prediction of substrate proteins from amino acid sequence.
Maurer-Stroh S; Eisenhaber B; Eisenhaber F
J Mol Biol; 2002 Apr; 317(4):541-57. PubMed ID: 11955008
[TBL] [Abstract][Full Text] [Related]
19. fastSCOP: a fast web server for recognizing protein structural domains and SCOP superfamilies.
Tung CH; Yang JM
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W438-43. PubMed ID: 17485476
[TBL] [Abstract][Full Text] [Related]
20. Predicted role for the archease protein family based on structural and sequence analysis of TM1083 and MTH1598, two proteins structurally characterized through structural genomics efforts.
Canaves JM
Proteins; 2004 Jul; 56(1):19-27. PubMed ID: 15162483
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]