264 related articles for article (PubMed ID: 14693812)
1. Adaptive stochastic-deterministic chemical kinetic simulations.
Vasudeva K; Bhalla US
Bioinformatics; 2004 Jan; 20(1):78-84. PubMed ID: 14693812
[TBL] [Abstract][Full Text] [Related]
2. Multiscale Hy3S: hybrid stochastic simulation for supercomputers.
Salis H; Sotiropoulos V; Kaznessis YN
BMC Bioinformatics; 2006 Feb; 7():93. PubMed ID: 16504125
[TBL] [Abstract][Full Text] [Related]
3. Hybrid deterministic/stochastic simulation of complex biochemical systems.
Lecca P; Bagagiolo F; Scarpa M
Mol Biosyst; 2017 Nov; 13(12):2672-2686. PubMed ID: 29058744
[TBL] [Abstract][Full Text] [Related]
4. In silico simulation of biological network dynamics.
Salwinski L; Eisenberg D
Nat Biotechnol; 2004 Aug; 22(8):1017-9. PubMed ID: 15235611
[TBL] [Abstract][Full Text] [Related]
5. CERENA: ChEmical REaction Network Analyzer--A Toolbox for the Simulation and Analysis of Stochastic Chemical Kinetics.
Kazeroonian A; Fröhlich F; Raue A; Theis FJ; Hasenauer J
PLoS One; 2016; 11(1):e0146732. PubMed ID: 26807911
[TBL] [Abstract][Full Text] [Related]
6. The need for speed in stochastic simulation.
Lok L
Nat Biotechnol; 2004 Aug; 22(8):964-5. PubMed ID: 15286647
[No Abstract] [Full Text] [Related]
7. Bridging the gap between stochastic and deterministic regimes in the kinetic simulations of the biochemical reaction networks.
Puchałka J; Kierzek AM
Biophys J; 2004 Mar; 86(3):1357-72. PubMed ID: 14990466
[TBL] [Abstract][Full Text] [Related]
8. Accuracy of the Michaelis-Menten approximation when analysing effects of molecular noise.
Lawson MJ; Petzold L; Hellander A
J R Soc Interface; 2015 May; 12(106):. PubMed ID: 25833240
[TBL] [Abstract][Full Text] [Related]
9. Developing complex signaling models using GENESIS/Kinetikit.
Vayttaden SJ; Bhalla US
Sci STKE; 2004 Feb; 2004(219):pl4. PubMed ID: 14872097
[TBL] [Abstract][Full Text] [Related]
10. A multi-scaled approach for simulating chemical reaction systems.
Burrage K; Tian T; Burrage P
Prog Biophys Mol Biol; 2004; 85(2-3):217-34. PubMed ID: 15142745
[TBL] [Abstract][Full Text] [Related]
11. STOCKS: STOChastic Kinetic Simulations of biochemical systems with Gillespie algorithm.
Kierzek AM
Bioinformatics; 2002 Mar; 18(3):470-81. PubMed ID: 11934747
[TBL] [Abstract][Full Text] [Related]
12. Modeling signal transduction networks: a comparison of two stochastic kinetic simulation algorithms.
Pettigrew MF; Resat H
J Chem Phys; 2005 Sep; 123(11):114707. PubMed ID: 16392583
[TBL] [Abstract][Full Text] [Related]
13. Hybrid simulations of stochastic reaction-diffusion processes for modeling intracellular signaling pathways.
Chiam KH; Tan CM; Bhargava V; Rajagopal G
Phys Rev E Stat Nonlin Soft Matter Phys; 2006 Nov; 74(5 Pt 1):051910. PubMed ID: 17279942
[TBL] [Abstract][Full Text] [Related]
14. Dizzy: stochastic simulation of large-scale genetic regulatory networks.
Ramsey S; Orrell D; Bolouri H
J Bioinform Comput Biol; 2005 Apr; 3(2):415-36. PubMed ID: 15852513
[TBL] [Abstract][Full Text] [Related]
15. Stochastic simulation of chemical kinetics.
Gillespie DT
Annu Rev Phys Chem; 2007; 58():35-55. PubMed ID: 17037977
[TBL] [Abstract][Full Text] [Related]
16. Size-independent differences between the mean of discrete stochastic systems and the corresponding continuous deterministic systems.
Gadgil CJ
Bull Math Biol; 2009 Oct; 71(7):1599-611. PubMed ID: 19322613
[TBL] [Abstract][Full Text] [Related]
17. Accurate hybrid stochastic simulation of a system of coupled chemical or biochemical reactions.
Salis H; Kaznessis Y
J Chem Phys; 2005 Feb; 122(5):54103. PubMed ID: 15740306
[TBL] [Abstract][Full Text] [Related]
18. MONALISA for stochastic simulations of Petri net models of biochemical systems.
Balazki P; Lindauer K; Einloft J; Ackermann J; Koch I
BMC Bioinformatics; 2015 Jul; 16():215. PubMed ID: 26156221
[TBL] [Abstract][Full Text] [Related]
19. Moment closure approximations for stochastic kinetic models with rational rate laws.
Milner P; Gillespie CS; Wilkinson DJ
Math Biosci; 2011 Jun; 231(2):99-104. PubMed ID: 21338614
[TBL] [Abstract][Full Text] [Related]
20. pSSAlib: The partial-propensity stochastic chemical network simulator.
Ostrenko O; Incardona P; Ramaswamy R; Brusch L; Sbalzarini IF
PLoS Comput Biol; 2017 Dec; 13(12):e1005865. PubMed ID: 29206229
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]