188 related articles for article (PubMed ID: 14708578)
1. A survey of codon and amino acid frequency bias in microbial genomes focusing on translational efficiency.
Merkl R
J Mol Evol; 2003 Oct; 57(4):453-66. PubMed ID: 14708578
[TBL] [Abstract][Full Text] [Related]
2. The Selective Advantage of Synonymous Codon Usage Bias in Salmonella.
Brandis G; Hughes D
PLoS Genet; 2016 Mar; 12(3):e1005926. PubMed ID: 26963725
[TBL] [Abstract][Full Text] [Related]
3. Intragenic spatial patterns of codon usage bias in prokaryotic and eukaryotic genomes.
Qin H; Wu WB; Comeron JM; Kreitman M; Li WH
Genetics; 2004 Dec; 168(4):2245-60. PubMed ID: 15611189
[TBL] [Abstract][Full Text] [Related]
4. Quantifying the species-specificity in genomic signatures, synonymous codon choice, amino acid usage and G+C content.
Sandberg R; Bränden CI; Ernberg I; Cöster J
Gene; 2003 Jun; 311():35-42. PubMed ID: 12853136
[TBL] [Abstract][Full Text] [Related]
5. Looking into the genome of Thermosynechococcus elongatus (thermophilic cyanobacteria) with codon selection and usage perspective.
Prabha R; Singh DP; Rai A
Int J Bioinform Res Appl; 2015; 11(2):130-41. PubMed ID: 25786792
[TBL] [Abstract][Full Text] [Related]
6. Thermophilic prokaryotes have characteristic patterns of codon usage, amino acid composition and nucleotide content.
Singer GA; Hickey DA
Gene; 2003 Oct; 317(1-2):39-47. PubMed ID: 14604790
[TBL] [Abstract][Full Text] [Related]
7. Preferential usage of some minor codons in bacteria.
Ohno H; Sakai H; Washio T; Tomita M
Gene; 2001 Oct; 276(1-2):107-15. PubMed ID: 11591477
[TBL] [Abstract][Full Text] [Related]
8. The 'weighted sum of relative entropy': a new index for synonymous codon usage bias.
Suzuki H; Saito R; Tomita M
Gene; 2004 Jun; 335():19-23. PubMed ID: 15194186
[TBL] [Abstract][Full Text] [Related]
9. Hidden patterns of codon usage bias across kingdoms.
Deng Y; de Lima Hedayioglu F; Kalfon J; Chu D; von der Haar T
J R Soc Interface; 2020 Feb; 17(163):20190819. PubMed ID: 32070219
[TBL] [Abstract][Full Text] [Related]
10. The action of selection on codon bias in the human genome is related to frequency, complexity, and chronology of amino acids.
Kotlar D; Lavner Y
BMC Genomics; 2006 Apr; 7():67. PubMed ID: 16584540
[TBL] [Abstract][Full Text] [Related]
11. The genome of Campylobacter jejuni: codon and amino acid usage.
Fuglsang A
APMIS; 2003 Jun; 111(6):605-18. PubMed ID: 12969016
[TBL] [Abstract][Full Text] [Related]
12. Reinvestigating the codon and amino acid usage of S. cerevisiae genome: a new insight from protein secondary structure analysis.
Kahali B; Basak S; Ghosh TC
Biochem Biophys Res Commun; 2007 Mar; 354(3):693-9. PubMed ID: 17258174
[TBL] [Abstract][Full Text] [Related]
13. Detection of genes with atypical nucleotide sequence in microbial genomes.
Hooper SD; Berg OG
J Mol Evol; 2002 Mar; 54(3):365-75. PubMed ID: 11847562
[TBL] [Abstract][Full Text] [Related]
14. The effective number of codons for individual amino acids: some codons are more optimal than others.
Fuglsang A
Gene; 2003 Nov; 320():185-90. PubMed ID: 14597402
[TBL] [Abstract][Full Text] [Related]
15. CodonO: codon usage bias analysis within and across genomes.
Angellotti MC; Bhuiyan SB; Chen G; Wan XF
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W132-6. PubMed ID: 17537810
[TBL] [Abstract][Full Text] [Related]
16. Mining prokaryotic genomes for unknown amino acids: a stop-codon-based approach.
Fujita M; Mihara H; Goto S; Esaki N; Kanehisa M
BMC Bioinformatics; 2007 Jun; 8():225. PubMed ID: 17597547
[TBL] [Abstract][Full Text] [Related]
17. A simple program to calculate codon bias index.
Wang TT; Cheng WC; Lee BH
Mol Biotechnol; 1998 Oct; 10(2):103-6. PubMed ID: 9819810
[TBL] [Abstract][Full Text] [Related]
18. Balanced codon usage optimizes eukaryotic translational efficiency.
Qian W; Yang JR; Pearson NM; Maclean C; Zhang J
PLoS Genet; 2012; 8(3):e1002603. PubMed ID: 22479199
[TBL] [Abstract][Full Text] [Related]
19. Amino acid and codon usage profiles: adaptive changes in the frequency of amino acids and codons.
Goodarzi H; Torabi N; Najafabadi HS; Archetti M
Gene; 2008 Jan; 407(1-2):30-41. PubMed ID: 17977670
[TBL] [Abstract][Full Text] [Related]
20. Codon usage bias is correlated with gene expression levels in the fission yeast Schizosaccharomyces pombe.
Hiraoka Y; Kawamata K; Haraguchi T; Chikashige Y
Genes Cells; 2009 Apr; 14(4):499-509. PubMed ID: 19335619
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]