These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

240 related articles for article (PubMed ID: 1476996)

  • 1. POCKET: a computer graphics method for identifying and displaying protein cavities and their surrounding amino acids.
    Levitt DG; Banaszak LJ
    J Mol Graph; 1992 Dec; 10(4):229-34. PubMed ID: 1476996
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Extraction, quantification and visualization of protein pockets.
    Zhang X; Bajaj C
    Comput Syst Bioinformatics Conf; 2007; 6():275-86. PubMed ID: 17951831
    [TBL] [Abstract][Full Text] [Related]  

  • 3. CX, an algorithm that identifies protruding atoms in proteins.
    Pintar A; Carugo O; Pongor S
    Bioinformatics; 2002 Jul; 18(7):980-4. PubMed ID: 12117796
    [TBL] [Abstract][Full Text] [Related]  

  • 4. A novel and efficient tool for locating and characterizing protein cavities and binding sites.
    Tripathi A; Kellogg GE
    Proteins; 2010 Mar; 78(4):825-42. PubMed ID: 19847777
    [TBL] [Abstract][Full Text] [Related]  

  • 5. pvSOAR: detecting similar surface patterns of pocket and void surfaces of amino acid residues on proteins.
    Binkowski TA; Freeman P; Liang J
    Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W555-8. PubMed ID: 15215448
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Anatomy of protein pockets and cavities: measurement of binding site geometry and implications for ligand design.
    Liang J; Edelsbrunner H; Woodward C
    Protein Sci; 1998 Sep; 7(9):1884-97. PubMed ID: 9761470
    [TBL] [Abstract][Full Text] [Related]  

  • 7. A very fast program for visualizing protein surfaces, channels and cavities.
    Voorintholt R; Kosters MT; Vegter G; Vriend G; Hol WG
    J Mol Graph; 1989 Dec; 7(4):243-5. PubMed ID: 2486827
    [TBL] [Abstract][Full Text] [Related]  

  • 8. A computer graphics program system for protein structure representation.
    Ross AM; Golub EE
    Nucleic Acids Res; 1988 Mar; 16(5):1801-12. PubMed ID: 2832829
    [TBL] [Abstract][Full Text] [Related]  

  • 9. CASTp: computed atlas of surface topography of proteins with structural and topographical mapping of functionally annotated residues.
    Dundas J; Ouyang Z; Tseng J; Binkowski A; Turpaz Y; Liang J
    Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W116-8. PubMed ID: 16844972
    [TBL] [Abstract][Full Text] [Related]  

  • 10. A graph-theoretic approach to the identification of three-dimensional patterns of amino acid side-chains in protein structures.
    Artymiuk PJ; Poirrette AR; Grindley HM; Rice DW; Willett P
    J Mol Biol; 1994 Oct; 243(2):327-44. PubMed ID: 7932758
    [TBL] [Abstract][Full Text] [Related]  

  • 11. A new approach to the automatic identification of candidates for ligand receptor sites in proteins: (I). Search for pocket regions.
    Del Carpio CA; Takahashi Y; Sasaki S
    J Mol Graph; 1993 Mar; 11(1):23-9, 42. PubMed ID: 8499393
    [TBL] [Abstract][Full Text] [Related]  

  • 12. A technique for identifying atoms from a screen image.
    Kuznetsov DA; Abagyan RA
    J Mol Graph; 1993 Dec; 11(4):245-7. PubMed ID: 8136327
    [TBL] [Abstract][Full Text] [Related]  

  • 13. LIGSITE: automatic and efficient detection of potential small molecule-binding sites in proteins.
    Hendlich M; Rippmann F; Barnickel G
    J Mol Graph Model; 1997 Dec; 15(6):359-63, 389. PubMed ID: 9704298
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Detection of multiscale pockets on protein surfaces using mathematical morphology.
    Kawabata T
    Proteins; 2010 Apr; 78(5):1195-211. PubMed ID: 19938154
    [TBL] [Abstract][Full Text] [Related]  

  • 15. MOMENT: software for analysis and display of amphiphilic regions in proteins.
    Partis MD
    Comput Appl Biosci; 1992 Apr; 8(2):185-8. PubMed ID: 1591614
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Surface solid angle-based site points for molecular docking.
    Hendrix DK; Kuntz ID
    Pac Symp Biocomput; 1998; ():317-26. PubMed ID: 9697192
    [TBL] [Abstract][Full Text] [Related]  

  • 17. BiasViz: visualization of amino acid biased regions in protein alignments.
    Huska MR; Buschmann H; Andrade-Navarro MA
    Bioinformatics; 2007 Nov; 23(22):3093-4. PubMed ID: 17921493
    [TBL] [Abstract][Full Text] [Related]  

  • 18. A high-throughput graphics library designed for a portable molecular structure viewer.
    Ueno Y; Asai K
    Pac Symp Biocomput; 1998; ():201-12. PubMed ID: 9697183
    [TBL] [Abstract][Full Text] [Related]  

  • 19. SURFNET: a program for visualizing molecular surfaces, cavities, and intermolecular interactions.
    Laskowski RA
    J Mol Graph; 1995 Oct; 13(5):323-30, 307-8. PubMed ID: 8603061
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Multi-scale Visualization of Molecular Architecture Using Real-Time Ambient Occlusion in Sculptor.
    Wahle M; Wriggers W
    PLoS Comput Biol; 2015 Oct; 11(10):e1004516. PubMed ID: 26505203
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.