107 related articles for article (PubMed ID: 14960301)
1. Absolute expression values for mouse transcripts: re-annotation of the READ expression database by the use of CAGE and EST sequence tags.
Kodzius R; Matsumura Y; Kasukawa T; Shimokawa K; Fukuda S; Shiraki T; Nakamura M; Arakawa T; Sasaki D; Kawai J; Harbers M; Carninci P; Hayashizaki Y
FEBS Lett; 2004 Feb; 559(1-3):22-6. PubMed ID: 14960301
[TBL] [Abstract][Full Text] [Related]
2. A rescue strategy for multimapping short sequence tags refines surveys of transcriptional activity by CAGE.
Faulkner GJ; Forrest AR; Chalk AM; Schroder K; Hayashizaki Y; Carninci P; Hume DA; Grimmond SM
Genomics; 2008 Mar; 91(3):281-8. PubMed ID: 18178374
[TBL] [Abstract][Full Text] [Related]
3. CAGE Basic/Analysis Databases: the CAGE resource for comprehensive promoter analysis.
Kawaji H; Kasukawa T; Fukuda S; Katayama S; Kai C; Kawai J; Carninci P; Hayashizaki Y
Nucleic Acids Res; 2006 Jan; 34(Database issue):D632-6. PubMed ID: 16381948
[TBL] [Abstract][Full Text] [Related]
4. Novel retinal genes discovered by mining the mouse embryonic RetinalExpress database.
Liang S; Zhao S; Mu X; Thomas T; Klein WH
Mol Vis; 2004 Oct; 10():773-86. PubMed ID: 15496829
[TBL] [Abstract][Full Text] [Related]
5. Annotating nonspecific SAGE tags with microarray data.
Ge X; Jung YC; Wu Q; Kibbe WA; Wang SM
Genomics; 2006 Jan; 87(1):173-80. PubMed ID: 16314072
[TBL] [Abstract][Full Text] [Related]
6. Congruence of tissue expression profiles from Gene Expression Atlas, SAGEmap and TissueInfo databases.
Huminiecki L; Lloyd AT; Wolfe KH
BMC Genomics; 2003 Jul; 4(1):31. PubMed ID: 12885301
[TBL] [Abstract][Full Text] [Related]
7. Identitag, a relational database for SAGE tag identification and interspecies comparison of SAGE libraries.
Keime C; Damiola F; Mouchiroud D; Duret L; Gandrillon O
BMC Bioinformatics; 2004 Oct; 5():143. PubMed ID: 15469608
[TBL] [Abstract][Full Text] [Related]
8. Transcriptome annotation using tandem SAGE tags.
Rivals E; Boureux A; Lejeune M; Ottones F; Pérez OP; Tarhio J; Pierrat F; Ruffle F; Commes T; Marti J
Nucleic Acids Res; 2007; 35(17):e108. PubMed ID: 17709346
[TBL] [Abstract][Full Text] [Related]
9. Pepper EST database: comprehensive in silico tool for analyzing the chili pepper (Capsicum annuum) transcriptome.
Kim HJ; Baek KH; Lee SW; Kim J; Lee BW; Cho HS; Kim WT; Choi D; Hur CG
BMC Plant Biol; 2008 Oct; 8():101. PubMed ID: 18844979
[TBL] [Abstract][Full Text] [Related]
10. Penaeus monodon gene discovery project: the generation of an EST collection and establishment of a database.
Tassanakajon A; Klinbunga S; Paunglarp N; Rimphanitchayakit V; Udomkit A; Jitrapakdee S; Sritunyalucksana K; Phongdara A; Pongsomboon S; Supungul P; Tang S; Kuphanumart K; Pichyangkura R; Lursinsap C
Gene; 2006 Dec; 384():104-12. PubMed ID: 16945489
[TBL] [Abstract][Full Text] [Related]
11. A hitchhiker's guide to expressed sequence tag (EST) analysis.
Nagaraj SH; Gasser RB; Ranganathan S
Brief Bioinform; 2007 Jan; 8(1):6-21. PubMed ID: 16772268
[TBL] [Abstract][Full Text] [Related]
12. Quantitative gene expression profiling of mouse brain regions reveals differential transcripts conserved in human and affected in disease models.
Brochier C; Gaillard MC; Diguet E; Caudy N; Dossat C; Ségurens B; Wincker P; Roze E; Caboche J; Hantraye P; Brouillet E; Elalouf JM; de Chaldée M
Physiol Genomics; 2008 Apr; 33(2):170-9. PubMed ID: 18252803
[TBL] [Abstract][Full Text] [Related]
13. Deep cap analysis gene expression (CAGE): genome-wide identification of promoters, quantification of their expression, and network inference.
de Hoon M; Hayashizaki Y
Biotechniques; 2008 Apr; 44(5):627-8, 630, 632. PubMed ID: 18474037
[TBL] [Abstract][Full Text] [Related]
14. Whole-body gene expression by data mining.
Pires Martins R; Leach RE; Krawetz SA
Genomics; 2001 Feb; 72(1):34-42. PubMed ID: 11247664
[TBL] [Abstract][Full Text] [Related]
15. The Diatom EST Database.
Maheswari U; Montsant A; Goll J; Krishnasamy S; Rajyashri KR; Patell VM; Bowler C
Nucleic Acids Res; 2005 Jan; 33(Database issue):D344-7. PubMed ID: 15608213
[TBL] [Abstract][Full Text] [Related]
16. Widespread distribution of antisense transcripts in the Plasmodium falciparum genome.
Gunasekera AM; Patankar S; Schug J; Eisen G; Kissinger J; Roos D; Wirth DF
Mol Biochem Parasitol; 2004 Jul; 136(1):35-42. PubMed ID: 15138065
[TBL] [Abstract][Full Text] [Related]
17. Gene expression profiling in the striatum of inbred mouse strains with distinct opioid-related phenotypes.
Korostynski M; Kaminska-Chowaniec D; Piechota M; Przewlocki R
BMC Genomics; 2006 Jun; 7():146. PubMed ID: 16772024
[TBL] [Abstract][Full Text] [Related]
18. Comparative gene expression analysis of murine retina and brain.
Hackam AS; Qian J; Liu D; Gunatilaka T; Farkas RH; Chowers I; Kageyama M; Parmigiani G; Zack DJ
Mol Vis; 2004 Aug; 10():637-49. PubMed ID: 15359217
[TBL] [Abstract][Full Text] [Related]
19. Microarray and EST database estimates of mRNA expression levels differ: the protein length versus expression curve for C. elegans.
Munoz ET; Bogarad LD; Deem MW
BMC Genomics; 2004 May; 5(1):30. PubMed ID: 15134588
[TBL] [Abstract][Full Text] [Related]
20. Gene identification through large-scale EST sequence processing.
Lindlöf A
Appl Bioinformatics; 2003; 2(3):123-9. PubMed ID: 15130797
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
