137 related articles for article (PubMed ID: 14962924)
1. A perturbation-based method for calculating explicit likelihood of evolutionary co-variance in multiple sequence alignments.
Dekker JP; Fodor A; Aldrich RW; Yellen G
Bioinformatics; 2004 Jul; 20(10):1565-72. PubMed ID: 14962924
[TBL] [Abstract][Full Text] [Related]
2. Prediction of functional specificity determinants from protein sequences using log-likelihood ratios.
Pei J; Cai W; Kinch LN; Grishin NV
Bioinformatics; 2006 Jan; 22(2):164-71. PubMed ID: 16278237
[TBL] [Abstract][Full Text] [Related]
3. Family specific rates of protein evolution.
Luz H; Vingron M
Bioinformatics; 2006 May; 22(10):1166-71. PubMed ID: 16510497
[TBL] [Abstract][Full Text] [Related]
4. Application of a simple likelihood ratio approximant to protein sequence classification.
Kaján L; Kertész-Farkas A; Franklin D; Ivanova N; Kocsor A; Pongor S
Bioinformatics; 2006 Dec; 22(23):2865-9. PubMed ID: 17090576
[TBL] [Abstract][Full Text] [Related]
5. Imprint of evolutionary conservation and protein structure variation on the binding function of protein tyrosine kinases.
Verkhivker GM
Bioinformatics; 2006 Aug; 22(15):1846-54. PubMed ID: 16720585
[TBL] [Abstract][Full Text] [Related]
6. Prediction of the phenotypic effects of non-synonymous single nucleotide polymorphisms using structural and evolutionary information.
Bao L; Cui Y
Bioinformatics; 2005 May; 21(10):2185-90. PubMed ID: 15746281
[TBL] [Abstract][Full Text] [Related]
7. An alternative model of amino acid replacement.
Crooks GE; Brenner SE
Bioinformatics; 2005 Apr; 21(7):975-80. PubMed ID: 15531614
[TBL] [Abstract][Full Text] [Related]
8. Assessment of the probabilities for evolutionary structural changes in protein folds.
Viksna J; Gilbert D
Bioinformatics; 2007 Apr; 23(7):832-41. PubMed ID: 17282999
[TBL] [Abstract][Full Text] [Related]
9. Pandit: a database of protein and associated nucleotide domains with inferred trees.
Whelan S; de Bakker PI; Goldman N
Bioinformatics; 2003 Aug; 19(12):1556-63. PubMed ID: 12912837
[TBL] [Abstract][Full Text] [Related]
10. Vorolign--fast structural alignment using Voronoi contacts.
Birzele F; Gewehr JE; Csaba G; Zimmer R
Bioinformatics; 2007 Jan; 23(2):e205-11. PubMed ID: 17237093
[TBL] [Abstract][Full Text] [Related]
11. Protein structure alignment considering phenotypic plasticity.
Csaba G; Birzele F; Zimmer R
Bioinformatics; 2008 Aug; 24(16):i98-104. PubMed ID: 18689847
[TBL] [Abstract][Full Text] [Related]
12. An integrated approach to the analysis and modeling of protein sequences and structures. III. A comparative study of sequence conservation in protein structural families using multiple structural alignments.
Yang AS; Honig B
J Mol Biol; 2000 Aug; 301(3):691-711. PubMed ID: 10966778
[TBL] [Abstract][Full Text] [Related]
13. A novel method for estimating ancestral amino acid composition and its application to proteins of the Last Universal Ancestor.
Brooks DJ; Fresco JR; Singh M
Bioinformatics; 2004 Sep; 20(14):2251-7. PubMed ID: 15073018
[TBL] [Abstract][Full Text] [Related]
14. MISFITS: evaluating the goodness of fit between a phylogenetic model and an alignment.
Nguyen MA; Klaere S; von Haeseler A
Mol Biol Evol; 2011 Jan; 28(1):143-52. PubMed ID: 20643866
[TBL] [Abstract][Full Text] [Related]
15. Bayesian coestimation of phylogeny and sequence alignment.
Lunter G; Miklós I; Drummond A; Jensen JL; Hein J
BMC Bioinformatics; 2005 Apr; 6():83. PubMed ID: 15804354
[TBL] [Abstract][Full Text] [Related]
16. On the quality of tree-based protein classification.
Lazareva-Ulitsky B; Diemer K; Thomas PD
Bioinformatics; 2005 May; 21(9):1876-90. PubMed ID: 15647305
[TBL] [Abstract][Full Text] [Related]
17. PCOAT: positional correlation analysis using multiple methods.
Qi Y; Grishin NV
Bioinformatics; 2004 Dec; 20(18):3697-9. PubMed ID: 15271785
[TBL] [Abstract][Full Text] [Related]
18. REVCOM: a robust Bayesian method for evolutionary rate estimation.
Bordner AJ; Abagyan R
Bioinformatics; 2005 May; 21(10):2315-21. PubMed ID: 15749694
[TBL] [Abstract][Full Text] [Related]
19. Enhanced statistics for local alignment of multiple alignments improves prediction of protein function and structure.
Frenkel-Morgenstern M; Voet H; Pietrokovski S
Bioinformatics; 2005 Jul; 21(13):2950-6. PubMed ID: 15870168
[TBL] [Abstract][Full Text] [Related]
20. pIQPNNI: parallel reconstruction of large maximum likelihood phylogenies.
Minh BQ; Vinh le S; von Haeseler A; Schmidt HA
Bioinformatics; 2005 Oct; 21(19):3794-6. PubMed ID: 16046495
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
