239 related articles for article (PubMed ID: 14978706)
1. SVMtm: support vector machines to predict transmembrane segments.
Yuan Z; Mattick JS; Teasdale RD
J Comput Chem; 2004 Apr; 25(5):632-6. PubMed ID: 14978706
[TBL] [Abstract][Full Text] [Related]
2. Prediction of helix-helix contacts and interacting helices in polytopic membrane proteins using neural networks.
Fuchs A; Kirschner A; Frishman D
Proteins; 2009 Mar; 74(4):857-71. PubMed ID: 18704938
[TBL] [Abstract][Full Text] [Related]
3. Evaluation of methods for predicting the topology of beta-barrel outer membrane proteins and a consensus prediction method.
Bagos PG; Liakopoulos TD; Hamodrakas SJ
BMC Bioinformatics; 2005 Jan; 6():7. PubMed ID: 15647112
[TBL] [Abstract][Full Text] [Related]
4. ZPRED: predicting the distance to the membrane center for residues in alpha-helical membrane proteins.
Granseth E; Viklund H; Elofsson A
Bioinformatics; 2006 Jul; 22(14):e191-6. PubMed ID: 16873471
[TBL] [Abstract][Full Text] [Related]
5. Neural network-based prediction of transmembrane beta-strand segments in outer membrane proteins.
Gromiha MM; Ahmad S; Suwa M
J Comput Chem; 2004 Apr; 25(5):762-7. PubMed ID: 14978719
[TBL] [Abstract][Full Text] [Related]
6. OCTOPUS: improving topology prediction by two-track ANN-based preference scores and an extended topological grammar.
Viklund H; Elofsson A
Bioinformatics; 2008 Aug; 24(15):1662-8. PubMed ID: 18474507
[TBL] [Abstract][Full Text] [Related]
7. Highly accurate and consistent method for prediction of helix and strand content from primary protein sequences.
Ruan J; Wang K; Yang J; Kurgan LA; Cios K
Artif Intell Med; 2005; 35(1-2):19-35. PubMed ID: 16081261
[TBL] [Abstract][Full Text] [Related]
8. STAM: simple transmembrane alignment method.
Shafrir Y; Guy HR
Bioinformatics; 2004 Mar; 20(5):758-69. PubMed ID: 14751993
[TBL] [Abstract][Full Text] [Related]
9. A knowledge-based scale for amino acid membrane propensity.
Punta M; Maritan A
Proteins; 2003 Jan; 50(1):114-21. PubMed ID: 12471604
[TBL] [Abstract][Full Text] [Related]
10. TRAMPLE: the transmembrane protein labelling environment.
Fariselli P; Finelli M; Rossi I; Amico M; Zauli A; Martelli PL; Casadio R
Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W198-201. PubMed ID: 15980454
[TBL] [Abstract][Full Text] [Related]
11. waveTM: wavelet-based transmembrane segment prediction.
Pashou EE; Litou ZI; Liakopoulos TD; Hamodrakas SJ
In Silico Biol; 2004; 4(2):127-31. PubMed ID: 15107018
[TBL] [Abstract][Full Text] [Related]
12. Predicting disulfide connectivity from protein sequence using multiple sequence feature vectors and secondary structure.
Song J; Yuan Z; Tan H; Huber T; Burrage K
Bioinformatics; 2007 Dec; 23(23):3147-54. PubMed ID: 17942444
[TBL] [Abstract][Full Text] [Related]
13. Enhanced membrane protein topology prediction using a hierarchical classification method and a new scoring function.
Lo A; Chiu HS; Sung TY; Lyu PC; Hsu WL
J Proteome Res; 2008 Feb; 7(2):487-96. PubMed ID: 18081245
[TBL] [Abstract][Full Text] [Related]
14. Topology prediction for helical transmembrane proteins at 86% accuracy.
Rost B; Fariselli P; Casadio R
Protein Sci; 1996 Aug; 5(8):1704-18. PubMed ID: 8844859
[TBL] [Abstract][Full Text] [Related]
15. Transmembrane helices predicted at 95% accuracy.
Rost B; Casadio R; Fariselli P; Sander C
Protein Sci; 1995 Mar; 4(3):521-33. PubMed ID: 7795533
[TBL] [Abstract][Full Text] [Related]
16. Combined prediction of transmembrane topology and signal peptide of beta-barrel proteins: using a hidden Markov model and genetic algorithms.
Zou L; Wang Z; Wang Y; Hu F
Comput Biol Med; 2010 Jul; 40(7):621-8. PubMed ID: 20488436
[TBL] [Abstract][Full Text] [Related]
17. Improving the accuracy of transmembrane protein topology prediction using evolutionary information.
Jones DT
Bioinformatics; 2007 Mar; 23(5):538-44. PubMed ID: 17237066
[TBL] [Abstract][Full Text] [Related]
18. Computational differentiation of N-terminal signal peptides and transmembrane helices.
Yuan Z; Davis MJ; Zhang F; Teasdale RD
Biochem Biophys Res Commun; 2003 Dec; 312(4):1278-83. PubMed ID: 14652012
[TBL] [Abstract][Full Text] [Related]
19. How strongly do sequence conservation patterns and empirical scales correlate with exposure patterns of transmembrane helices of membrane proteins?
Park Y; Helms V
Biopolymers; 2006 Nov; 83(4):389-99. PubMed ID: 16838301
[TBL] [Abstract][Full Text] [Related]
20. Co-evolving residues in membrane proteins.
Fuchs A; Martin-Galiano AJ; Kalman M; Fleishman S; Ben-Tal N; Frishman D
Bioinformatics; 2007 Dec; 23(24):3312-9. PubMed ID: 18065429
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]