240 related articles for article (PubMed ID: 14980022)
1. A transition probability model for amino acid substitutions from blocks.
Veerassamy S; Smith A; Tillier ER
J Comput Biol; 2003; 10(6):997-1010. PubMed ID: 14980022
[TBL] [Abstract][Full Text] [Related]
2. Amino acid substitution matrices from an artificial neural network model.
Lin K; May AC; Taylor WR
J Comput Biol; 2001; 8(5):471-81. PubMed ID: 11694178
[TBL] [Abstract][Full Text] [Related]
3. Empirical models for substitution in ribosomal RNA.
Smith AD; Lui TW; Tillier ER
Mol Biol Evol; 2004 Mar; 21(3):419-27. PubMed ID: 14660689
[TBL] [Abstract][Full Text] [Related]
4. Improved pairwise alignments of proteins in the Twilight Zone using local structure predictions.
Huang YM; Bystroff C
Bioinformatics; 2006 Feb; 22(4):413-22. PubMed ID: 16352653
[TBL] [Abstract][Full Text] [Related]
5. The ranging of amino acids substitution matrices of various types in accordance with the alignment accuracy criterion.
Polyanovsky V; Lifanov A; Esipova N; Tumanyan V
BMC Bioinformatics; 2020 Sep; 21(Suppl 11):294. PubMed ID: 32921315
[TBL] [Abstract][Full Text] [Related]
6. Robust sequence alignment using evolutionary rates coupled with an amino acid substitution matrix.
Ndhlovu A; Hazelhurst S; Durand PM
BMC Bioinformatics; 2015 Aug; 16():255. PubMed ID: 26269100
[TBL] [Abstract][Full Text] [Related]
7. Context-specific amino acid substitution matrices and their use in the detection of protein homologs.
Goonesekere NC; Lee B
Proteins; 2008 May; 71(2):910-9. PubMed ID: 18004781
[TBL] [Abstract][Full Text] [Related]
8. Comparison of the PAM and BLOSUM Amino Acid Substitution Matrices.
Mount DW
CSH Protoc; 2008 Jun; 2008():pdb.ip59. PubMed ID: 21356840
[TBL] [Abstract][Full Text] [Related]
9. Scoredist: a simple and robust protein sequence distance estimator.
Sonnhammer EL; Hollich V
BMC Bioinformatics; 2005 Apr; 6():108. PubMed ID: 15857510
[TBL] [Abstract][Full Text] [Related]
10. Substitution matrices of residue triplets derived from protein blocks.
Liu X; Zhao YP
J Comput Biol; 2010 Dec; 17(12):1679-87. PubMed ID: 21128854
[TBL] [Abstract][Full Text] [Related]
11. Using BLOSUM in Sequence Alignments.
Mount DW
CSH Protoc; 2008 Jun; 2008():pdb.top39. PubMed ID: 21356855
[TBL] [Abstract][Full Text] [Related]
12. An amino acid substitution matrix for protein conformation identification.
Liu X; Zheng WM
J Bioinform Comput Biol; 2006 Jun; 4(3):769-82. PubMed ID: 16960974
[TBL] [Abstract][Full Text] [Related]
13. Amino acid substitution scoring matrices specific to intrinsically disordered regions in proteins.
Trivedi R; Nagarajaram HA
Sci Rep; 2019 Nov; 9(1):16380. PubMed ID: 31704957
[TBL] [Abstract][Full Text] [Related]
14. Empirical codon substitution matrix.
Schneider A; Cannarozzi GM; Gonnet GH
BMC Bioinformatics; 2005 Jun; 6():134. PubMed ID: 15927081
[TBL] [Abstract][Full Text] [Related]
15. Modeling protein evolution with several amino acid replacement matrices depending on site rates.
Le SQ; Dang CC; Gascuel O
Mol Biol Evol; 2012 Oct; 29(10):2921-36. PubMed ID: 22491036
[TBL] [Abstract][Full Text] [Related]
16. Periodic distributions of hydrophobic amino acids allows the definition of fundamental building blocks to align distantly related proteins.
Baussand J; Deremble C; Carbone A
Proteins; 2007 May; 67(3):695-708. PubMed ID: 17299747
[TBL] [Abstract][Full Text] [Related]
17. The construction of amino acid substitution matrices for the comparison of proteins with non-standard compositions.
Yu YK; Altschul SF
Bioinformatics; 2005 Apr; 21(7):902-11. PubMed ID: 15509610
[TBL] [Abstract][Full Text] [Related]
18. OXBench: a benchmark for evaluation of protein multiple sequence alignment accuracy.
Raghava GP; Searle SM; Audley PC; Barber JD; Barton GJ
BMC Bioinformatics; 2003 Oct; 4():47. PubMed ID: 14552658
[TBL] [Abstract][Full Text] [Related]
19. Substitution scoring matrices for proteins - An overview.
Trivedi R; Nagarajaram HA
Protein Sci; 2020 Nov; 29(11):2150-2163. PubMed ID: 32954566
[TBL] [Abstract][Full Text] [Related]
20. On the significance of sequence alignments when using multiple scoring matrices.
Frommlet F; Futschik A; Bogdan M
Bioinformatics; 2004 Apr; 20(6):881-7. PubMed ID: 14751984
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]