BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

240 related articles for article (PubMed ID: 14980022)

  • 1. A transition probability model for amino acid substitutions from blocks.
    Veerassamy S; Smith A; Tillier ER
    J Comput Biol; 2003; 10(6):997-1010. PubMed ID: 14980022
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Amino acid substitution matrices from an artificial neural network model.
    Lin K; May AC; Taylor WR
    J Comput Biol; 2001; 8(5):471-81. PubMed ID: 11694178
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Empirical models for substitution in ribosomal RNA.
    Smith AD; Lui TW; Tillier ER
    Mol Biol Evol; 2004 Mar; 21(3):419-27. PubMed ID: 14660689
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Improved pairwise alignments of proteins in the Twilight Zone using local structure predictions.
    Huang YM; Bystroff C
    Bioinformatics; 2006 Feb; 22(4):413-22. PubMed ID: 16352653
    [TBL] [Abstract][Full Text] [Related]  

  • 5. The ranging of amino acids substitution matrices of various types in accordance with the alignment accuracy criterion.
    Polyanovsky V; Lifanov A; Esipova N; Tumanyan V
    BMC Bioinformatics; 2020 Sep; 21(Suppl 11):294. PubMed ID: 32921315
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Robust sequence alignment using evolutionary rates coupled with an amino acid substitution matrix.
    Ndhlovu A; Hazelhurst S; Durand PM
    BMC Bioinformatics; 2015 Aug; 16():255. PubMed ID: 26269100
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Context-specific amino acid substitution matrices and their use in the detection of protein homologs.
    Goonesekere NC; Lee B
    Proteins; 2008 May; 71(2):910-9. PubMed ID: 18004781
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Comparison of the PAM and BLOSUM Amino Acid Substitution Matrices.
    Mount DW
    CSH Protoc; 2008 Jun; 2008():pdb.ip59. PubMed ID: 21356840
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Scoredist: a simple and robust protein sequence distance estimator.
    Sonnhammer EL; Hollich V
    BMC Bioinformatics; 2005 Apr; 6():108. PubMed ID: 15857510
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Substitution matrices of residue triplets derived from protein blocks.
    Liu X; Zhao YP
    J Comput Biol; 2010 Dec; 17(12):1679-87. PubMed ID: 21128854
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Using BLOSUM in Sequence Alignments.
    Mount DW
    CSH Protoc; 2008 Jun; 2008():pdb.top39. PubMed ID: 21356855
    [TBL] [Abstract][Full Text] [Related]  

  • 12. An amino acid substitution matrix for protein conformation identification.
    Liu X; Zheng WM
    J Bioinform Comput Biol; 2006 Jun; 4(3):769-82. PubMed ID: 16960974
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Amino acid substitution scoring matrices specific to intrinsically disordered regions in proteins.
    Trivedi R; Nagarajaram HA
    Sci Rep; 2019 Nov; 9(1):16380. PubMed ID: 31704957
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Empirical codon substitution matrix.
    Schneider A; Cannarozzi GM; Gonnet GH
    BMC Bioinformatics; 2005 Jun; 6():134. PubMed ID: 15927081
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Modeling protein evolution with several amino acid replacement matrices depending on site rates.
    Le SQ; Dang CC; Gascuel O
    Mol Biol Evol; 2012 Oct; 29(10):2921-36. PubMed ID: 22491036
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Periodic distributions of hydrophobic amino acids allows the definition of fundamental building blocks to align distantly related proteins.
    Baussand J; Deremble C; Carbone A
    Proteins; 2007 May; 67(3):695-708. PubMed ID: 17299747
    [TBL] [Abstract][Full Text] [Related]  

  • 17. The construction of amino acid substitution matrices for the comparison of proteins with non-standard compositions.
    Yu YK; Altschul SF
    Bioinformatics; 2005 Apr; 21(7):902-11. PubMed ID: 15509610
    [TBL] [Abstract][Full Text] [Related]  

  • 18. OXBench: a benchmark for evaluation of protein multiple sequence alignment accuracy.
    Raghava GP; Searle SM; Audley PC; Barber JD; Barton GJ
    BMC Bioinformatics; 2003 Oct; 4():47. PubMed ID: 14552658
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Substitution scoring matrices for proteins - An overview.
    Trivedi R; Nagarajaram HA
    Protein Sci; 2020 Nov; 29(11):2150-2163. PubMed ID: 32954566
    [TBL] [Abstract][Full Text] [Related]  

  • 20. On the significance of sequence alignments when using multiple scoring matrices.
    Frommlet F; Futschik A; Bogdan M
    Bioinformatics; 2004 Apr; 20(6):881-7. PubMed ID: 14751984
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.