BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

240 related articles for article (PubMed ID: 14980022)

  • 41. Sequence alignment with an appropriate substitution matrix.
    Huang X
    J Comput Biol; 2008 Mar; 15(2):129-38. PubMed ID: 18312146
    [TBL] [Abstract][Full Text] [Related]  

  • 42. Eigenvalue analysis of amino acid substitution matrices reveals a sharp transition of the mode of sequence conservation in proteins.
    Kinjo AR; Nishikawa K
    Bioinformatics; 2004 Nov; 20(16):2504-8. PubMed ID: 15130930
    [TBL] [Abstract][Full Text] [Related]  

  • 43. RBLOSUM performs better than CorBLOSUM with lesser error per query.
    Govindarajan R; Leela BC; Nair AS
    BMC Res Notes; 2018 May; 11(1):328. PubMed ID: 29784028
    [TBL] [Abstract][Full Text] [Related]  

  • 44. Selecting the right protein-scoring matrix.
    Wheeler D
    Curr Protoc Bioinformatics; 2002 Nov; Chapter 3():Unit 3.5. PubMed ID: 18792939
    [TBL] [Abstract][Full Text] [Related]  

  • 45. Selecting the Right Similarity-Scoring Matrix.
    Pearson WR
    Curr Protoc Bioinformatics; 2013; 43():3.5.1-3.5.9. PubMed ID: 24509512
    [TBL] [Abstract][Full Text] [Related]  

  • 46. Analysis of covariation in an SH3 domain sequence alignment: applications in tertiary contact prediction and the design of compensating hydrophobic core substitutions.
    Larson SM; Di Nardo AA; Davidson AR
    J Mol Biol; 2000 Oct; 303(3):433-46. PubMed ID: 11031119
    [TBL] [Abstract][Full Text] [Related]  

  • 47. Analysis of differences in amino acid substitution patterns, using multilevel G-tests.
    Pacholczyk M; Kimmel M
    C R Biol; 2005 Jul; 328(7):632-41. PubMed ID: 15992746
    [TBL] [Abstract][Full Text] [Related]  

  • 48. An assessment of amino acid exchange matrices in aligning protein sequences: the twilight zone revisited.
    Vogt G; Etzold T; Argos P
    J Mol Biol; 1995 Jun; 249(4):816-31. PubMed ID: 7602593
    [TBL] [Abstract][Full Text] [Related]  

  • 49. Amino acid "little Big Bang": representing amino acid substitution matrices as dot products of Euclidian vectors.
    Zimmermann K; Gibrat JF
    BMC Bioinformatics; 2010 Jan; 11():4. PubMed ID: 20047649
    [TBL] [Abstract][Full Text] [Related]  

  • 50. Novel protein weight matrix generated from amino acid indices.
    Chrysostomou C; Seker H
    Annu Int Conf IEEE Eng Med Biol Soc; 2015 Aug; 2015():8181-4. PubMed ID: 26738193
    [TBL] [Abstract][Full Text] [Related]  

  • 51. A configuration space of homologous proteins conserving mutual information and allowing a phylogeny inference based on pair-wise Z-score probabilities.
    Bastien O; Ortet P; Roy S; Maréchal E
    BMC Bioinformatics; 2005 Mar; 6():49. PubMed ID: 15757521
    [TBL] [Abstract][Full Text] [Related]  

  • 52. The impact of single substitutions on multiple sequence alignments.
    Klaere S; Gesell T; von Haeseler A
    Philos Trans R Soc Lond B Biol Sci; 2008 Dec; 363(1512):4041-7. PubMed ID: 18852110
    [TBL] [Abstract][Full Text] [Related]  

  • 53. Protein sequence-structure alignment based on site-alignment probabilities.
    Miyazawa S
    Genome Inform Ser Workshop Genome Inform; 2000; 11():141-50. PubMed ID: 11700595
    [TBL] [Abstract][Full Text] [Related]  

  • 54. Bayesian coestimation of phylogeny and sequence alignment.
    Lunter G; Miklós I; Drummond A; Jensen JL; Hein J
    BMC Bioinformatics; 2005 Apr; 6():83. PubMed ID: 15804354
    [TBL] [Abstract][Full Text] [Related]  

  • 55. PFASUM: a substitution matrix from Pfam structural alignments.
    Keul F; Hess M; Goesele M; Hamacher K
    BMC Bioinformatics; 2017 Jun; 18(1):293. PubMed ID: 28583067
    [TBL] [Abstract][Full Text] [Related]  

  • 56. A collection of amino acid replacement matrices derived from clusters of orthologs.
    Olsen R; Loomis WF
    J Mol Evol; 2005 Nov; 61(5):659-65. PubMed ID: 16245010
    [TBL] [Abstract][Full Text] [Related]  

  • 57. Evaluation performance of substitution matrices, based on contacts between residue terminal groups.
    Vishnepolsky B; Managadze G; Grigolava M; Pirtskhalava M
    J Biomol Struct Dyn; 2012; 30(2):180-90. PubMed ID: 22702729
    [TBL] [Abstract][Full Text] [Related]  

  • 58. An improved general amino acid replacement matrix.
    Le SQ; Gascuel O
    Mol Biol Evol; 2008 Jul; 25(7):1307-20. PubMed ID: 18367465
    [TBL] [Abstract][Full Text] [Related]  

  • 59. FastMG: a simple, fast, and accurate maximum likelihood procedure to estimate amino acid replacement rate matrices from large data sets.
    Dang CC; Le VS; Gascuel O; Hazes B; Le QS
    BMC Bioinformatics; 2014 Oct; 15(1):341. PubMed ID: 25344302
    [TBL] [Abstract][Full Text] [Related]  

  • 60. Statistical potential-based amino acid similarity matrices for aligning distantly related protein sequences.
    Tan YH; Huang H; Kihara D
    Proteins; 2006 Aug; 64(3):587-600. PubMed ID: 16799934
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 12.