These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

92 related articles for article (PubMed ID: 15001477)

  • 1. A Web-based design center for vector-based siRNA and siRNA cassette.
    Wang L; Mu FY
    Bioinformatics; 2004 Jul; 20(11):1818-20. PubMed ID: 15001477
    [TBL] [Abstract][Full Text] [Related]  

  • 2. siDirect: highly effective, target-specific siRNA design software for mammalian RNA interference.
    Naito Y; Yamada T; Ui-Tei K; Morishita S; Saigo K
    Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W124-9. PubMed ID: 15215364
    [TBL] [Abstract][Full Text] [Related]  

  • 3. DEQOR: a web-based tool for the design and quality control of siRNAs.
    Henschel A; Buchholz F; Habermann B
    Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W113-20. PubMed ID: 15215362
    [TBL] [Abstract][Full Text] [Related]  

  • 4. dsCheck: highly sensitive off-target search software for double-stranded RNA-mediated RNA interference.
    Naito Y; Yamada T; Matsumiya T; Ui-Tei K; Saigo K; Morishita S
    Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W589-91. PubMed ID: 15980542
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Development of a software tool and criteria evaluation for efficient design of small interfering RNA.
    Chaudhary A; Srivastava S; Garg S
    Biochem Biophys Res Commun; 2011 Jan; 404(1):313-20. PubMed ID: 21145307
    [TBL] [Abstract][Full Text] [Related]  

  • 6. TROD: T7 RNAi Oligo Designer.
    Dudek P; Picard D
    Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W121-3. PubMed ID: 15215363
    [TBL] [Abstract][Full Text] [Related]  

  • 7. www.rnaworkbench.com: A new program for analyzing RNA interference.
    Vareková RS; Bradác I; Plchút M; Skrdla M; Wacenovsky M; Mahr H; Mayer G; Tanner H; Brugger H; Withalm J; Lederer P; Huber H; Gierlinger G; Graf R; Tafer H; Hofacker I; Schuster P; Polcík M
    Comput Methods Programs Biomed; 2008 Apr; 90(1):89-94. PubMed ID: 18207283
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Using OligoWalk to identify efficient siRNA sequences.
    Mathews DH
    Methods Mol Biol; 2010; 629():109-21. PubMed ID: 20387146
    [TBL] [Abstract][Full Text] [Related]  

  • 9. siVirus: web-based antiviral siRNA design software for highly divergent viral sequences.
    Naito Y; Ui-Tei K; Nishikawa T; Takebe Y; Saigo K
    Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W448-50. PubMed ID: 16845046
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Optimization of an siRNA-expression system with an improved hairpin and its significant suppressive effects in mammalian cells.
    Miyagishi M; Sumimoto H; Miyoshi H; Kawakami Y; Taira K
    J Gene Med; 2004 Jul; 6(7):715-23. PubMed ID: 15241778
    [TBL] [Abstract][Full Text] [Related]  

  • 11. siDRM: an effective and generally applicable online siRNA design tool.
    Gong W; Ren Y; Zhou H; Wang Y; Kang S; Li T
    Bioinformatics; 2008 Oct; 24(20):2405-6. PubMed ID: 18718944
    [TBL] [Abstract][Full Text] [Related]  

  • 12. RFRCDB-siRNA: improved design of siRNAs by random forest regression model coupled with database searching.
    Jiang P; Wu H; Da Y; Sang F; Wei J; Sun X; Lu Z
    Comput Methods Programs Biomed; 2007 Sep; 87(3):230-8. PubMed ID: 17644215
    [TBL] [Abstract][Full Text] [Related]  

  • 13. siRNA Selection Server: an automated siRNA oligonucleotide prediction server.
    Yuan B; Latek R; Hossbach M; Tuschl T; Lewitter F
    Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W130-4. PubMed ID: 15215365
    [TBL] [Abstract][Full Text] [Related]  

  • 14. A protocol for designing siRNAs with high functionality and specificity.
    Birmingham A; Anderson E; Sullivan K; Reynolds A; Boese Q; Leake D; Karpilow J; Khvorova A
    Nat Protoc; 2007; 2(9):2068-78. PubMed ID: 17853862
    [TBL] [Abstract][Full Text] [Related]  

  • 15. sIR: siRNA Information Resource, a web-based tool for siRNA sequence design and analysis and an open access siRNA database.
    Shah JK; Garner HR; White MA; Shames DS; Minna JD
    BMC Bioinformatics; 2007 May; 8():178. PubMed ID: 17540034
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Designing functional siRNA with reduced off-target effects.
    Naito Y; Ui-Tei K
    Methods Mol Biol; 2013; 942():57-68. PubMed ID: 23027045
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Integrated siRNA design based on surveying of features associated with high RNAi effectiveness.
    Gong W; Ren Y; Xu Q; Wang Y; Lin D; Zhou H; Li T
    BMC Bioinformatics; 2006 Nov; 7():516. PubMed ID: 17129386
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Filtering of ineffective siRNAs and improved siRNA design tool.
    Yiu SM; Wong PW; Lam TW; Mui YC; Kung HF; Lin M; Cheung YT
    Bioinformatics; 2005 Jan; 21(2):144-51. PubMed ID: 15333460
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Gene specific siRNA selector.
    Levenkova N; Gu Q; Rux JJ
    Bioinformatics; 2004 Feb; 20(3):430-2. PubMed ID: 14960474
    [TBL] [Abstract][Full Text] [Related]  

  • 20. SECISDesign: a server to design SECIS-elements within the coding sequence.
    Busch A; Will S; Backofen R
    Bioinformatics; 2005 Aug; 21(15):3312-3. PubMed ID: 15919727
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 5.