232 related articles for article (PubMed ID: 15003460)
1. Discerning the structure and energy of multiple transition states in protein folding using psi-analysis.
Krantz BA; Dothager RS; Sosnick TR
J Mol Biol; 2004 Mar; 337(2):463-75. PubMed ID: 15003460
[TBL] [Abstract][Full Text] [Related]
2. Differences in the folding transition state of ubiquitin indicated by phi and psi analyses.
Sosnick TR; Dothager RS; Krantz BA
Proc Natl Acad Sci U S A; 2004 Dec; 101(50):17377-82. PubMed ID: 15576508
[TBL] [Abstract][Full Text] [Related]
3. Aromatic residues engineered into the beta-turn nucleation site of ubiquitin lead to a complex folding landscape, non-native side-chain interactions, and kinetic traps.
Rea AM; Simpson ER; Meldrum JK; Williams HE; Searle MS
Biochemistry; 2008 Dec; 47(48):12910-22. PubMed ID: 18991391
[TBL] [Abstract][Full Text] [Related]
4. Sequential barriers and an obligatory metastable intermediate define the apparent two-state folding pathway of the ubiquitin-like PB1 domain of NBR1.
Chen P; Long J; Searle MS
J Mol Biol; 2008 Mar; 376(5):1463-77. PubMed ID: 18234223
[TBL] [Abstract][Full Text] [Related]
5. Determination of the transition state ensemble for the folding of ubiquitin from a combination of Phi and Psi analyses.
Várnai P; Dobson CM; Vendruscolo M
J Mol Biol; 2008 Mar; 377(2):575-88. PubMed ID: 18262544
[TBL] [Abstract][Full Text] [Related]
6. Small proteins fold through transition states with native-like topologies.
Pandit AD; Jha A; Freed KF; Sosnick TR
J Mol Biol; 2006 Aug; 361(4):755-70. PubMed ID: 16876194
[TBL] [Abstract][Full Text] [Related]
7. Interpretation of protein folding psi values.
Bodenreider C; Kiefhaber T
J Mol Biol; 2005 Aug; 351(2):393-401. PubMed ID: 16005895
[TBL] [Abstract][Full Text] [Related]
8. Mutational analysis of the folding transition state of the C-terminal domain of ribosomal protein L9: a protein with an unusual beta-sheet topology.
Li Y; Gupta R; Cho JH; Raleigh DP
Biochemistry; 2007 Jan; 46(4):1013-21. PubMed ID: 17240985
[TBL] [Abstract][Full Text] [Related]
9. Structure of the transition state in the folding process of human procarboxypeptidase A2 activation domain.
Villegas V; Martínez JC; Avilés FX; Serrano L
J Mol Biol; 1998 Nov; 283(5):1027-36. PubMed ID: 9799641
[TBL] [Abstract][Full Text] [Related]
10. Engineering stabilising beta-sheet interactions into a conformationally flexible region of the folding transition state of ubiquitin.
Bofill R; Searle MS
J Mol Biol; 2005 Oct; 353(2):373-84. PubMed ID: 16169558
[TBL] [Abstract][Full Text] [Related]
11. Lattice models for proteins reveal multiple folding nuclei for nucleation-collapse mechanism.
Klimov DK; Thirumalai D
J Mol Biol; 1998 Sep; 282(2):471-92. PubMed ID: 9735420
[TBL] [Abstract][Full Text] [Related]
12. Helix mutations stabilize a late productive intermediate on the folding pathway of ubiquitin.
Rea AM; Simpson ER; Crespo MD; Searle MS
Biochemistry; 2008 Aug; 47(31):8225-36. PubMed ID: 18616284
[TBL] [Abstract][Full Text] [Related]
13. Ubiquitin folds through a highly polarized transition state.
Went HM; Jackson SE
Protein Eng Des Sel; 2005 May; 18(5):229-37. PubMed ID: 15857839
[TBL] [Abstract][Full Text] [Related]
14. Engineered metal binding sites map the heterogeneous folding landscape of a coiled coil.
Krantz BA; Sosnick TR
Nat Struct Biol; 2001 Dec; 8(12):1042-7. PubMed ID: 11694889
[TBL] [Abstract][Full Text] [Related]
15. Stability and folding kinetics of a ubiquitin mutant with a strong propensity for nonnative beta-hairpin conformation in the unfolded state.
Platt GW; Simpson SA; Layfield R; Searle MS
Biochemistry; 2003 Nov; 42(46):13762-71. PubMed ID: 14622023
[TBL] [Abstract][Full Text] [Related]
16. The effect of increasing the stability of non-native interactions on the folding landscape of the bacterial immunity protein Im9.
Morton VL; Friel CT; Allen LR; Paci E; Radford SE
J Mol Biol; 2007 Aug; 371(2):554-68. PubMed ID: 17574573
[TBL] [Abstract][Full Text] [Related]
17. The transition state of the ras binding domain of Raf is structurally polarized based on Phi-values but is energetically diffuse.
Campbell-Valois FX; Michnick SW
J Mol Biol; 2007 Feb; 365(5):1559-77. PubMed ID: 17137592
[TBL] [Abstract][Full Text] [Related]
18. Folding pathway dependence on energetic frustration and interaction heterogeneity for a three-dimensional hydrophobic protein model.
Garcia LG; Araújo AF
Proteins; 2006 Jan; 62(1):46-63. PubMed ID: 16292745
[TBL] [Abstract][Full Text] [Related]
19. The folding of an immunoglobulin-like Greek key protein is defined by a common-core nucleus and regions constrained by topology.
Hamill SJ; Steward A; Clarke J
J Mol Biol; 2000 Mar; 297(1):165-78. PubMed ID: 10704314
[TBL] [Abstract][Full Text] [Related]
20. Stiffness of the distal loop restricts the structural heterogeneity of the transition state ensemble in SH3 domains.
Klimov DK; Thirumalai D
J Mol Biol; 2002 Apr; 317(5):721-37. PubMed ID: 11955020
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
