These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

254 related articles for article (PubMed ID: 15042433)

  • 1. Local sequential minimization of double stranded B-DNA using Monte Carlo annealing.
    Sfyrakis K; Provata A; Povey DC; Howlin BJ
    J Mol Model; 2004 Jun; 10(3):185-97. PubMed ID: 15042433
    [TBL] [Abstract][Full Text] [Related]  

  • 2. A Monte Carlo method for generating structures of short single-stranded DNA sequences.
    Erie DA; Breslauer KJ; Olson WK
    Biopolymers; 1993 Jan; 33(1):75-105. PubMed ID: 8427940
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Sequence-dependent DNA structure: the role of the sugar-phosphate backbone.
    Packer MJ; Hunter CA
    J Mol Biol; 1998 Jul; 280(3):407-20. PubMed ID: 9665845
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Structural properties of hybrid triplex of polycation deoxyribonucleic S-methylthiourea (DNmt) strands with a complementary DNA strand, probed by nanosecond molecular dynamics.
    Luo J; Bruice TC
    J Biomol Struct Dyn; 2000 Feb; 17(4):629-43. PubMed ID: 10698101
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Local variability and base sequence effects in DNA crystal structures.
    Bhattacharyya D; Bansal M
    J Biomol Struct Dyn; 1990 Dec; 8(3):539-72. PubMed ID: 2100518
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Prediction of atomic structure from sequence for double helical DNA oligomers.
    Farwer J; Packer MJ; Hunter CA
    Biopolymers; 2006 Jan; 81(1):51-61. PubMed ID: 16184626
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Nucleic acid structure analysis: a users guide to a collection of new analysis programs.
    Babcock MS; Pednault EP; Olson WK
    J Biomol Struct Dyn; 1993 Dec; 11(3):597-628. PubMed ID: 7510497
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Determining local conformational variations in DNA. Nuclear magnetic resonance structures of the DNA duplexes d(CGCCTAATCG) and d(CGTCACGCGC) generated using back-calculation of the nuclear Overhauser effect spectra, a distance geometry algorithm and constrained molecular dynamics.
    Metzler WJ; Wang C; Kitchen DB; Levy RM; Pardi A
    J Mol Biol; 1990 Aug; 214(3):711-36. PubMed ID: 2167379
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Solution structure of an A-tract DNA bend.
    MacDonald D; Herbert K; Zhang X; Pologruto T; Lu P
    J Mol Biol; 2001 Mar; 306(5):1081-98. PubMed ID: 11237619
    [TBL] [Abstract][Full Text] [Related]  

  • 10. [Simulation of DNA conformation possibilities by means of nonbonded interaction energy calculations of complementary dinucleoside phosphate complexes].
    Poltev VI; Milova LA; Zhorov BS; Govyrin VA
    Mol Biol (Mosk); 1978; 12(6):1319-28. PubMed ID: 745605
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Molecular dynamics simulations of B '-DNA: sequence effects on A-tract-induced bending and flexibility.
    McConnell KJ; Beveridge DL
    J Mol Biol; 2001 Nov; 314(1):23-40. PubMed ID: 11724529
    [TBL] [Abstract][Full Text] [Related]  

  • 12. [Study of the flexibility of complementary dinucleoside phosphates by the Monte-Carlo method].
    Ul'ianov NB; Zhurkin VB
    Mol Biol (Mosk); 1982; 16(5):1075-85. PubMed ID: 6958972
    [TBL] [Abstract][Full Text] [Related]  

  • 13. [Anisotropic flexibility of DNA depends on the base sequence. Conformation calculations of double-stranded tetranucleotides AAAA:TTTT, (AATT)2, (TTAA)2, GGGG:CCCC, (GGCC)2, (CCGG)2].
    Ul'ianov NB; Zhurkin VB
    Mol Biol (Mosk); 1984; 18(6):1664-85. PubMed ID: 6521743
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Sequence-dependent elastic properties of DNA.
    Lankas F; Sponer J; Hobza P; Langowski J
    J Mol Biol; 2000 Jun; 299(3):695-709. PubMed ID: 10835278
    [TBL] [Abstract][Full Text] [Related]  

  • 15. C-H.O hydrogen bonds in minor groove of A-tracts in DNA double helices.
    Ghosh A; Bansal M
    J Mol Biol; 1999 Dec; 294(5):1149-58. PubMed ID: 10600373
    [TBL] [Abstract][Full Text] [Related]  

  • 16. The assessment of the geometry of dinucleotide steps in double-helical DNA; a new local calculation scheme.
    el Hassan MA; Calladine CR
    J Mol Biol; 1995 Sep; 251(5):648-64. PubMed ID: 7666417
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Structural features of B-DNA dodecamer crystal structures: influence of crystal packing versus base sequence.
    Ghosh A; Bansal M
    Indian J Biochem Biophys; 2001; 38(1-2):7-15. PubMed ID: 11563334
    [TBL] [Abstract][Full Text] [Related]  

  • 18. A computational approach to modeling nucleic acid hairpin structures.
    Tung CS
    Biophys J; 1997 Feb; 72(2 Pt 1):876-85. PubMed ID: 9017213
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Comparison of rotation models for describing DNA conformations: application to static and polymorphic forms.
    Mazur J; Jernigan RL
    Biophys J; 1995 Apr; 68(4):1472-89. PubMed ID: 7787033
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Structure of the d(CGCCCGCGGGCG) dodecamer: a kinked A-DNA molecule showing some B-DNA features.
    Malinina L; Fernandez LG; Huynh-Dinh T; Subirana JA
    J Mol Biol; 1999 Jan; 285(4):1679-90. PubMed ID: 9917405
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 13.