These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
123 related articles for article (PubMed ID: 15044240)
1. Performance of an iterated T-HMM for homology detection. Qian B; Goldstein RA Bioinformatics; 2004 Sep; 20(14):2175-80. PubMed ID: 15044240 [TBL] [Abstract][Full Text] [Related]
2. Protein homology detection by HMM-HMM comparison. Söding J Bioinformatics; 2005 Apr; 21(7):951-60. PubMed ID: 15531603 [TBL] [Abstract][Full Text] [Related]
3. Application of protein structure alignments to iterated hidden Markov model protocols for structure prediction. Scheeff ED; Bourne PE BMC Bioinformatics; 2006 Sep; 7():410. PubMed ID: 16970830 [TBL] [Abstract][Full Text] [Related]
4. SATCHMO: sequence alignment and tree construction using hidden Markov models. Edgar RC; Sjölander K Bioinformatics; 2003 Jul; 19(11):1404-11. PubMed ID: 12874053 [TBL] [Abstract][Full Text] [Related]
5. MRFalign: protein homology detection through alignment of Markov random fields. Ma J; Wang S; Wang Z; Xu J PLoS Comput Biol; 2014 Mar; 10(3):e1003500. PubMed ID: 24675572 [TBL] [Abstract][Full Text] [Related]
6. HMM-Kalign: a tool for generating sub-optimal HMM alignments. Becker E; Cotillard A; Meyer V; Madaoui H; Guérois R Bioinformatics; 2007 Nov; 23(22):3095-7. PubMed ID: 17921492 [TBL] [Abstract][Full Text] [Related]
7. Rapid and enhanced remote homology detection by cascading hidden Markov model searches in sequence space. Kaushik S; Nair AG; Mutt E; Subramanian HP; Sowdhamini R Bioinformatics; 2016 Feb; 32(3):338-44. PubMed ID: 26454276 [TBL] [Abstract][Full Text] [Related]
8. Using guide trees to construct multiple-sequence evolutionary HMMs. Holmes I Bioinformatics; 2003; 19 Suppl 1():i147-57. PubMed ID: 12855451 [TBL] [Abstract][Full Text] [Related]
9. HMM-ModE--improved classification using profile hidden Markov models by optimising the discrimination threshold and modifying emission probabilities with negative training sequences. Srivastava PK; Desai DK; Nandi S; Lynn AM BMC Bioinformatics; 2007 Mar; 8():104. PubMed ID: 17389042 [TBL] [Abstract][Full Text] [Related]
18. Prediction of functional specificity determinants from protein sequences using log-likelihood ratios. Pei J; Cai W; Kinch LN; Grishin NV Bioinformatics; 2006 Jan; 22(2):164-71. PubMed ID: 16278237 [TBL] [Abstract][Full Text] [Related]
19. An ENSEMBLE machine learning approach for the prediction of all-alpha membrane proteins. Martelli PL; Fariselli P; Casadio R Bioinformatics; 2003; 19 Suppl 1():i205-11. PubMed ID: 12855459 [TBL] [Abstract][Full Text] [Related]
20. An HMM model for coiled-coil domains and a comparison with PSSM-based predictions. Delorenzi M; Speed T Bioinformatics; 2002 Apr; 18(4):617-25. PubMed ID: 12016059 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]