These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

188 related articles for article (PubMed ID: 15044241)

  • 1. LumberJack: a heuristic tool for sequence alignment exploration and phylogenetic inference.
    Lawrence CJ; Zmasek CM; Dawe RK; Malmberg RL
    Bioinformatics; 2004 Aug; 20(12):1977-9. PubMed ID: 15044241
    [TBL] [Abstract][Full Text] [Related]  

  • 2. SeqVis: visualization of compositional heterogeneity in large alignments of nucleotides.
    Ho JW; Adams CE; Lew JB; Matthews TJ; Ng CC; Shahabi-Sirjani A; Tan LH; Zhao Y; Easteal S; Wilson SR; Jermiin LS
    Bioinformatics; 2006 Sep; 22(17):2162-3. PubMed ID: 16766557
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Phylogenetic exploration of bacterial genomic rearrangements.
    Fremez R; Faraut T; Fichant G; Gouzy J; Quentin Y
    Bioinformatics; 2007 May; 23(9):1172-4. PubMed ID: 17332021
    [TBL] [Abstract][Full Text] [Related]  

  • 4. RDP2: recombination detection and analysis from sequence alignments.
    Martin DP; Williamson C; Posada D
    Bioinformatics; 2005 Jan; 21(2):260-2. PubMed ID: 15377507
    [TBL] [Abstract][Full Text] [Related]  

  • 5. galaxie--CGI scripts for sequence identification through automated phylogenetic analysis.
    Nilsson RH; Larsson KH; Ursing BM
    Bioinformatics; 2004 Jun; 20(9):1447-52. PubMed ID: 14976034
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Phylo-VISTA: interactive visualization of multiple DNA sequence alignments.
    Shah N; Couronne O; Pennacchio LA; Brudno M; Batzoglou S; Bethel EW; Rubin EM; Hamann B; Dubchak I
    Bioinformatics; 2004 Mar; 20(5):636-43. PubMed ID: 15033870
    [TBL] [Abstract][Full Text] [Related]  

  • 7. GenAlyzer: interactive visualization of sequence similarities between entire genomes.
    Choudhuri JV; Schleiermacher C; Kurtz S; Giegerich R
    Bioinformatics; 2004 Aug; 20(12):1964-5. PubMed ID: 14988113
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Bayesian coestimation of phylogeny and sequence alignment.
    Lunter G; Miklós I; Drummond A; Jensen JL; Hein J
    BMC Bioinformatics; 2005 Apr; 6():83. PubMed ID: 15804354
    [TBL] [Abstract][Full Text] [Related]  

  • 9. SWAPSC: sliding window analysis procedure to detect selective constraints.
    Fares MA
    Bioinformatics; 2004 Nov; 20(16):2867-8. PubMed ID: 15130925
    [TBL] [Abstract][Full Text] [Related]  

  • 10. RED-T: utilizing the Ratios of Evolutionary Distances for determination of alternative phylogenetic events.
    Farahi K; Whitman WB; Kraemer ET
    Bioinformatics; 2003 Nov; 19(16):2152-4. PubMed ID: 14594724
    [TBL] [Abstract][Full Text] [Related]  

  • 11. ProfDist: a tool for the construction of large phylogenetic trees based on profile distances.
    Friedrich J; Dandekar T; Wolf M; Müller T
    Bioinformatics; 2005 May; 21(9):2108-9. PubMed ID: 15677706
    [TBL] [Abstract][Full Text] [Related]  

  • 12. QAlign: quality-based multiple alignments with dynamic phylogenetic analysis.
    Sammeth M; Rothgänger J; Esser W; Albert J; Stoye J; Harmsen D
    Bioinformatics; 2003 Aug; 19(12):1592-3. PubMed ID: 12912847
    [TBL] [Abstract][Full Text] [Related]  

  • 13. SATe-II: very fast and accurate simultaneous estimation of multiple sequence alignments and phylogenetic trees.
    Liu K; Warnow TJ; Holder MT; Nelesen SM; Yu J; Stamatakis AP; Linder CR
    Syst Biol; 2012 Jan; 61(1):90-106. PubMed ID: 22139466
    [TBL] [Abstract][Full Text] [Related]  

  • 14. LVB: parsimony and simulated annealing in the search for phylogenetic trees.
    Barker D
    Bioinformatics; 2004 Jan; 20(2):274-5. PubMed ID: 14734321
    [TBL] [Abstract][Full Text] [Related]  

  • 15. PhyPA: Phylogenetic method with pairwise sequence alignment outperforms likelihood methods in phylogenetics involving highly diverged sequences.
    Xia X
    Mol Phylogenet Evol; 2016 Sep; 102():331-43. PubMed ID: 27377322
    [TBL] [Abstract][Full Text] [Related]  

  • 16. TreeRefiner: a tool for refining a multiple alignment on a phylogenetic tree.
    Manohar A; Batzoglou S
    Proc IEEE Comput Syst Bioinform Conf; 2005; ():111-9. PubMed ID: 16447969
    [TBL] [Abstract][Full Text] [Related]  

  • 17. FootPrinter: A program designed for phylogenetic footprinting.
    Blanchette M; Tompa M
    Nucleic Acids Res; 2003 Jul; 31(13):3840-2. PubMed ID: 12824433
    [TBL] [Abstract][Full Text] [Related]  

  • 18. SlidingBayes: exploring recombination using a sliding window approach based on Bayesian phylogenetic inference.
    Paraskevis D; Deforche K; Lemey P; Magiorkinis G; Hatzakis A; Vandamme AM
    Bioinformatics; 2005 Apr; 21(7):1274-5. PubMed ID: 15546940
    [TBL] [Abstract][Full Text] [Related]  

  • 19. YASS: enhancing the sensitivity of DNA similarity search.
    Noé L; Kucherov G
    Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W540-3. PubMed ID: 15980530
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Rainbow: a toolbox for phylogenetic supertree construction and analysis.
    Chen D; Eulenstein O; Fernández-Baca D
    Bioinformatics; 2004 Nov; 20(16):2872-3. PubMed ID: 15145807
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.