128 related articles for article (PubMed ID: 15060015)
1. Visualization of multiple genome annotations and alignments with the K-BROWSER.
Chakrabarti K; Pachter L
Genome Res; 2004 Apr; 14(4):716-20. PubMed ID: 15060015
[TBL] [Abstract][Full Text] [Related]
2. Automated whole-genome multiple alignment of rat, mouse, and human.
Brudno M; Poliakov A; Salamov A; Cooper GM; Sidow A; Rubin EM; Solovyev V; Batzoglou S; Dubchak I
Genome Res; 2004 Apr; 14(4):685-92. PubMed ID: 15060011
[TBL] [Abstract][Full Text] [Related]
3. Mulan: multiple-sequence local alignment and visualization for studying function and evolution.
Ovcharenko I; Loots GG; Giardine BM; Hou M; Ma J; Hardison RC; Stubbs L; Miller W
Genome Res; 2005 Jan; 15(1):184-94. PubMed ID: 15590941
[TBL] [Abstract][Full Text] [Related]
4. Aligning multiple genomic sequences with the threaded blockset aligner.
Blanchette M; Kent WJ; Riemer C; Elnitski L; Smit AF; Roskin KM; Baertsch R; Rosenbloom K; Clawson H; Green ED; Haussler D; Miller W
Genome Res; 2004 Apr; 14(4):708-15. PubMed ID: 15060014
[TBL] [Abstract][Full Text] [Related]
5. Combo: a whole genome comparative browser.
Engels R; Yu T; Burge C; Mesirov JP; DeCaprio D; Galagan JE
Bioinformatics; 2006 Jul; 22(14):1782-3. PubMed ID: 16709588
[TBL] [Abstract][Full Text] [Related]
6. The UCSC Genome Browser.
Karolchik D; Hinrichs AS; Kent WJ
Curr Protoc Bioinformatics; 2007 Mar; Chapter 1():Unit 1.4. PubMed ID: 18428780
[TBL] [Abstract][Full Text] [Related]
7. MatGAT: an application that generates similarity/identity matrices using protein or DNA sequences.
Campanella JJ; Bitincka L; Smalley J
BMC Bioinformatics; 2003 Jul; 4():29. PubMed ID: 12854978
[TBL] [Abstract][Full Text] [Related]
8. ABC: software for interactive browsing of genomic multiple sequence alignment data.
Cooper GM; Singaravelu SA; Sidow A
BMC Bioinformatics; 2004 Dec; 5():192. PubMed ID: 15588288
[TBL] [Abstract][Full Text] [Related]
9. OMA Browser--exploring orthologous relations across 352 complete genomes.
Schneider A; Dessimoz C; Gonnet GH
Bioinformatics; 2007 Aug; 23(16):2180-2. PubMed ID: 17545180
[TBL] [Abstract][Full Text] [Related]
10. ECR Browser: a tool for visualizing and accessing data from comparisons of multiple vertebrate genomes.
Ovcharenko I; Nobrega MA; Loots GG; Stubbs L
Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W280-6. PubMed ID: 15215395
[TBL] [Abstract][Full Text] [Related]
11. The UCSC Genome Browser.
Karolchik D; Hinrichs AS; Kent WJ
Curr Protoc Hum Genet; 2011 Oct; Chapter 18():18.6.1-18.6.33. PubMed ID: 21975940
[TBL] [Abstract][Full Text] [Related]
12. CGAT: a comparative genome analysis tool for visualizing alignments in the analysis of complex evolutionary changes between closely related genomes.
Uchiyama I; Higuchi T; Kobayashi I
BMC Bioinformatics; 2006 Oct; 7():472. PubMed ID: 17062155
[TBL] [Abstract][Full Text] [Related]
13. zPicture: dynamic alignment and visualization tool for analyzing conservation profiles.
Ovcharenko I; Loots GG; Hardison RC; Miller W; Stubbs L
Genome Res; 2004 Mar; 14(3):472-7. PubMed ID: 14993211
[TBL] [Abstract][Full Text] [Related]
14. The UCSC Genome Browser Database: update 2006.
Hinrichs AS; Karolchik D; Baertsch R; Barber GP; Bejerano G; Clawson H; Diekhans M; Furey TS; Harte RA; Hsu F; Hillman-Jackson J; Kuhn RM; Pedersen JS; Pohl A; Raney BJ; Rosenbloom KR; Siepel A; Smith KE; Sugnet CW; Sultan-Qurraie A; Thomas DJ; Trumbower H; Weber RJ; Weirauch M; Zweig AS; Haussler D; Kent WJ
Nucleic Acids Res; 2006 Jan; 34(Database issue):D590-8. PubMed ID: 16381938
[TBL] [Abstract][Full Text] [Related]
15. COMPAM :visualization of combining pairwise alignments for multiple genomes.
Lee D; Choi JH; Dalkilic MM; Kim S
Bioinformatics; 2006 Jan; 22(2):242-4. PubMed ID: 16269416
[TBL] [Abstract][Full Text] [Related]
16. MoMI-G: modular multi-scale integrated genome graph browser.
Yokoyama TT; Sakamoto Y; Seki M; Suzuki Y; Kasahara M
BMC Bioinformatics; 2019 Nov; 20(1):548. PubMed ID: 31690272
[TBL] [Abstract][Full Text] [Related]
17. The UCSC genome browser database: update 2007.
Kuhn RM; Karolchik D; Zweig AS; Trumbower H; Thomas DJ; Thakkapallayil A; Sugnet CW; Stanke M; Smith KE; Siepel A; Rosenbloom KR; Rhead B; Raney BJ; Pohl A; Pedersen JS; Hsu F; Hinrichs AS; Harte RA; Diekhans M; Clawson H; Bejerano G; Barber GP; Baertsch R; Haussler D; Kent WJ
Nucleic Acids Res; 2007 Jan; 35(Database issue):D668-73. PubMed ID: 17142222
[TBL] [Abstract][Full Text] [Related]
18. MGAviewer: a desktop visualization tool for analysis of metagenomics alignment data.
Zhu Z; Niu B; Chen J; Wu S; Sun S; Li W
Bioinformatics; 2013 Jan; 29(1):122-3. PubMed ID: 23044549
[TBL] [Abstract][Full Text] [Related]
19. Increased alignment sensitivity improves the usage of genome alignments for comparative gene annotation.
Sharma V; Hiller M
Nucleic Acids Res; 2017 Aug; 45(14):8369-8377. PubMed ID: 28645144
[TBL] [Abstract][Full Text] [Related]
20. THoR: a tool for domain discovery and curation of multiple alignments.
Dickens NJ; Ponting CP
Genome Biol; 2003; 4(8):R52. PubMed ID: 12914660
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]