357 related articles for article (PubMed ID: 15070403)
1. A Hidden Markov Model method, capable of predicting and discriminating beta-barrel outer membrane proteins.
Bagos PG; Liakopoulos TD; Spyropoulos IC; Hamodrakas SJ
BMC Bioinformatics; 2004 Mar; 5():29. PubMed ID: 15070403
[TBL] [Abstract][Full Text] [Related]
2. Evaluation of methods for predicting the topology of beta-barrel outer membrane proteins and a consensus prediction method.
Bagos PG; Liakopoulos TD; Hamodrakas SJ
BMC Bioinformatics; 2005 Jan; 6():7. PubMed ID: 15647112
[TBL] [Abstract][Full Text] [Related]
3. PRED-TMBB: a web server for predicting the topology of beta-barrel outer membrane proteins.
Bagos PG; Liakopoulos TD; Spyropoulos IC; Hamodrakas SJ
Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W400-4. PubMed ID: 15215419
[TBL] [Abstract][Full Text] [Related]
4. Combined prediction of transmembrane topology and signal peptide of beta-barrel proteins: using a hidden Markov model and genetic algorithms.
Zou L; Wang Z; Wang Y; Hu F
Comput Biol Med; 2010 Jul; 40(7):621-8. PubMed ID: 20488436
[TBL] [Abstract][Full Text] [Related]
5. TMB-Hunt: an amino acid composition based method to screen proteomes for beta-barrel transmembrane proteins.
Garrow AG; Agnew A; Westhead DR
BMC Bioinformatics; 2005 Mar; 6():56. PubMed ID: 15769290
[TBL] [Abstract][Full Text] [Related]
6. Scoring hidden Markov models to discriminate beta-barrel membrane proteins.
Deng Y; Liu Q; Li YX
Comput Biol Chem; 2004 Jul; 28(3):189-94. PubMed ID: 15261149
[TBL] [Abstract][Full Text] [Related]
7. A consensus algorithm to screen genomes for novel families of transmembrane beta barrel proteins.
Garrow AG; Westhead DR
Proteins; 2007 Oct; 69(1):8-18. PubMed ID: 17557332
[TBL] [Abstract][Full Text] [Related]
8. Predicting transmembrane beta-barrels and interstrand residue interactions from sequence.
Waldispühl J; Berger B; Clote P; Steyaert JM
Proteins; 2006 Oct; 65(1):61-74. PubMed ID: 16858668
[TBL] [Abstract][Full Text] [Related]
9. Application of residue distribution along the sequence for discriminating outer membrane proteins.
Gromiha MM; Ahmad S; Suwa M
Comput Biol Chem; 2005 Apr; 29(2):135-42. PubMed ID: 15833441
[TBL] [Abstract][Full Text] [Related]
10. transFold: a web server for predicting the structure and residue contacts of transmembrane beta-barrels.
Waldispühl J; Berger B; Clote P; Steyaert JM
Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W189-93. PubMed ID: 16844989
[TBL] [Abstract][Full Text] [Related]
11. TMBpro: secondary structure, beta-contact and tertiary structure prediction of transmembrane beta-barrel proteins.
Randall A; Cheng J; Sweredoski M; Baldi P
Bioinformatics; 2008 Feb; 24(4):513-20. PubMed ID: 18006547
[TBL] [Abstract][Full Text] [Related]
12. An improved hidden Markov model for transmembrane protein detection and topology prediction and its applications to complete genomes.
Kahsay RY; Gao G; Liao L
Bioinformatics; 2005 May; 21(9):1853-8. PubMed ID: 15691854
[TBL] [Abstract][Full Text] [Related]
13. A sequence-profile-based HMM for predicting and discriminating beta barrel membrane proteins.
Martelli PL; Fariselli P; Krogh A; Casadio R
Bioinformatics; 2002; 18 Suppl 1():S46-53. PubMed ID: 12169530
[TBL] [Abstract][Full Text] [Related]
14. Principles governing amino acid composition of integral membrane proteins: application to topology prediction.
Tusnády GE; Simon I
J Mol Biol; 1998 Oct; 283(2):489-506. PubMed ID: 9769220
[TBL] [Abstract][Full Text] [Related]
15. TMBETADISC-RBF: Discrimination of beta-barrel membrane proteins using RBF networks and PSSM profiles.
Ou YY; Gromiha MM; Chen SA; Suwa M
Comput Biol Chem; 2008 Jun; 32(3):227-31. PubMed ID: 18434251
[TBL] [Abstract][Full Text] [Related]
16. Triage protein fold prediction.
He H; McAllister G; Smith TF
Proteins; 2002 Sep; 48(4):654-63. PubMed ID: 12211033
[TBL] [Abstract][Full Text] [Related]
17. A HMM-based method to predict the transmembrane regions of beta-barrel membrane proteins.
Liu Q; Zhu YS; Wang BH; Li YX
Comput Biol Chem; 2003 Feb; 27(1):69-76. PubMed ID: 12798041
[TBL] [Abstract][Full Text] [Related]
18. Discrimination of outer membrane proteins using support vector machines.
Park KJ; Gromiha MM; Horton P; Suwa M
Bioinformatics; 2005 Dec; 21(23):4223-9. PubMed ID: 16204348
[TBL] [Abstract][Full Text] [Related]
19. Prediction of membrane spanning segments and topology in beta-barrel membrane proteins at better accuracy.
Ou YY; Chen SA; Gromiha MM
J Comput Chem; 2010 Jan; 31(1):217-23. PubMed ID: 19421989
[TBL] [Abstract][Full Text] [Related]
20. Prediction of signal peptides in archaea.
Bagos PG; Tsirigos KD; Plessas SK; Liakopoulos TD; Hamodrakas SJ
Protein Eng Des Sel; 2009 Jan; 22(1):27-35. PubMed ID: 18988691
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]