BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

107 related articles for article (PubMed ID: 15073004)

  • 1. Combining pattern discovery and discriminant analysis to predict gene co-regulation.
    Simonis N; Wodak SJ; Cohen GN; van Helden J
    Bioinformatics; 2004 Oct; 20(15):2370-9. PubMed ID: 15073004
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Complementary techniques of clustering and composite pattern analysis to Saccharomyces cerevisiae gene expression.
    Magusin A
    Appl Bioinformatics; 2003; 2(3 Suppl):S37-46. PubMed ID: 15130815
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Combining phylogenetic motif discovery and motif clustering to predict co-regulated genes.
    Jensen ST; Shen L; Liu JS
    Bioinformatics; 2005 Oct; 21(20):3832-9. PubMed ID: 16105899
    [TBL] [Abstract][Full Text] [Related]  

  • 4. A mixture model-based discriminate analysis for identifying ordered transcription factor binding site pairs in gene promoters directly regulated by estrogen receptor-alpha.
    Li L; Cheng AS; Jin VX; Paik HH; Fan M; Li X; Zhang W; Robarge J; Balch C; Davuluri RV; Kim S; Huang TH; Nephew KP
    Bioinformatics; 2006 Sep; 22(18):2210-6. PubMed ID: 16809387
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Identification of DNA regulatory motifs using Bayesian variable selection.
    Tadesse MG; Vannucci M; Liò P
    Bioinformatics; 2004 Nov; 20(16):2553-61. PubMed ID: 15117754
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Identification of co-regulated genes through Bayesian clustering of predicted regulatory binding sites.
    Qin ZS; McCue LA; Thompson W; Mayerhofer L; Lawrence CE; Liu JS
    Nat Biotechnol; 2003 Apr; 21(4):435-9. PubMed ID: 12627170
    [TBL] [Abstract][Full Text] [Related]  

  • 7. A profile-based deterministic sequential Monte Carlo algorithm for motif discovery.
    Liang KC; Wang X; Anastassiou D
    Bioinformatics; 2008 Jan; 24(1):46-55. PubMed ID: 18024972
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Predicting genetic regulatory response using classification.
    Middendorf M; Kundaje A; Wiggins C; Freund Y; Leslie C
    Bioinformatics; 2004 Aug; 20 Suppl 1():i232-40. PubMed ID: 15262804
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Discrimination of yeast genes involved in methionine and phosphate metabolism on the basis of upstream motifs.
    Gonze D; Pinloche S; Gascuel O; van Helden J
    Bioinformatics; 2005 Sep; 21(17):3490-500. PubMed ID: 15998664
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Metrics for comparing regulatory sequences on the basis of pattern counts.
    van Helden J
    Bioinformatics; 2004 Feb; 20(3):399-406. PubMed ID: 14764560
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Regression trees for regulatory element identification.
    Phuong TM; Lee D; Lee KH
    Bioinformatics; 2004 Mar; 20(5):750-7. PubMed ID: 14751992
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Bayesian detection of periodic mRNA time profiles without use of training examples.
    Andersson CR; Isaksson A; Gustafsson MG
    BMC Bioinformatics; 2006 Feb; 7():63. PubMed ID: 16469110
    [TBL] [Abstract][Full Text] [Related]  

  • 13. MUSA: a parameter free algorithm for the identification of biologically significant motifs.
    Mendes ND; Casimiro AC; Santos PM; Sá-Correia I; Oliveira AL; Freitas AT
    Bioinformatics; 2006 Dec; 22(24):2996-3002. PubMed ID: 17068086
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Method for identifying transcription factor binding sites in yeast.
    Tsai HK; Huang GT; Chou MY; Lu HH; Li WH
    Bioinformatics; 2006 Jul; 22(14):1675-81. PubMed ID: 16644789
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Genome-wide discovery of transcriptional modules from DNA sequence and gene expression.
    Segal E; Yelensky R; Koller D
    Bioinformatics; 2003; 19 Suppl 1():i273-82. PubMed ID: 12855470
    [TBL] [Abstract][Full Text] [Related]  

  • 16. A Gibbs sampler for identification of symmetrically structured, spaced DNA motifs with improved estimation of the signal length.
    Favorov AV; Gelfand MS; Gerasimova AV; Ravcheev DA; Mironov AA; Makeev VJ
    Bioinformatics; 2005 May; 21(10):2240-5. PubMed ID: 15728117
    [TBL] [Abstract][Full Text] [Related]  

  • 17. RSIR: regularized sliced inverse regression for motif discovery.
    Zhong W; Zeng P; Ma P; Liu JS; Zhu Y
    Bioinformatics; 2005 Nov; 21(22):4169-75. PubMed ID: 16166098
    [TBL] [Abstract][Full Text] [Related]  

  • 18. SPACER: identification of cis-regulatory elements with non-contiguous critical residues.
    Chakravarty A; Carlson JM; Khetani RS; DeZiel CE; Gross RH
    Bioinformatics; 2007 Apr; 23(8):1029-31. PubMed ID: 17470480
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Nucleotide variation of regulatory motifs may lead to distinct expression patterns.
    Segal L; Lapidot M; Solan Z; Ruppin E; Pilpel Y; Horn D
    Bioinformatics; 2007 Jul; 23(13):i440-9. PubMed ID: 17646329
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Regulatory motif finding by logic regression.
    Keles S; van der Laan MJ; Vulpe C
    Bioinformatics; 2004 Nov; 20(16):2799-811. PubMed ID: 15166027
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.