348 related articles for article (PubMed ID: 15080731)
1. High-throughput identification of proteins and unanticipated sequence modifications using a mass-based alignment algorithm for MS/MS de novo sequencing results.
Searle BC; Dasari S; Turner M; Reddy AP; Choi D; Wilmarth PA; McCormack AL; David LL; Nagalla SR
Anal Chem; 2004 Apr; 76(8):2220-30. PubMed ID: 15080731
[TBL] [Abstract][Full Text] [Related]
2. Proteomics-grade de novo sequencing approach.
Savitski MM; Nielsen ML; Kjeldsen F; Zubarev RA
J Proteome Res; 2005; 4(6):2348-54. PubMed ID: 16335984
[TBL] [Abstract][Full Text] [Related]
3. Sequence database searches via de novo peptide sequencing by tandem mass spectrometry.
Taylor JA; Johnson RS
Rapid Commun Mass Spectrom; 1997; 11(9):1067-75. PubMed ID: 9204580
[TBL] [Abstract][Full Text] [Related]
4. De novo sequencing methods in proteomics.
Hughes C; Ma B; Lajoie GA
Methods Mol Biol; 2010; 604():105-21. PubMed ID: 20013367
[TBL] [Abstract][Full Text] [Related]
5. PEAKS: powerful software for peptide de novo sequencing by tandem mass spectrometry.
Ma B; Zhang K; Hendrie C; Liang C; Li M; Doherty-Kirby A; Lajoie G
Rapid Commun Mass Spectrom; 2003; 17(20):2337-42. PubMed ID: 14558135
[TBL] [Abstract][Full Text] [Related]
6. Comprehensive mass spectrometric analysis of the 20S proteasome complex.
Huang L; Burlingame AL
Methods Enzymol; 2005; 405():187-236. PubMed ID: 16413316
[TBL] [Abstract][Full Text] [Related]
7. pNovo: de novo peptide sequencing and identification using HCD spectra.
Chi H; Sun RX; Yang B; Song CQ; Wang LH; Liu C; Fu Y; Yuan ZF; Wang HP; He SM; Dong MQ
J Proteome Res; 2010 May; 9(5):2713-24. PubMed ID: 20329752
[TBL] [Abstract][Full Text] [Related]
8. MSNovo: a dynamic programming algorithm for de novo peptide sequencing via tandem mass spectrometry.
Mo L; Dutta D; Wan Y; Chen T
Anal Chem; 2007 Jul; 79(13):4870-8. PubMed ID: 17550227
[TBL] [Abstract][Full Text] [Related]
9. A hybrid method for peptide identification using integer linear optimization, local database search, and quadrupole time-of-flight or OrbiTrap tandem mass spectrometry.
DiMaggio PA; Floudas CA; Lu B; Yates JR
J Proteome Res; 2008 Apr; 7(4):1584-93. PubMed ID: 18324765
[TBL] [Abstract][Full Text] [Related]
10. CHASE, a charge-assisted sequencing algorithm for automated homology-based protein identifications with matrix-assisted laser desorption/ionization time-of-flight post-source decay fragmentation data.
Raucci G; Gabrielli M; Novelli S; Picariello G; Collins SH
J Mass Spectrom; 2005 Apr; 40(4):475-88. PubMed ID: 15712359
[TBL] [Abstract][Full Text] [Related]
11. De novo peptide sequencing based on a divide-and-conquer algorithm and peptide tandem spectrum simulation.
Zhang Z
Anal Chem; 2004 Nov; 76(21):6374-83. PubMed ID: 15516130
[TBL] [Abstract][Full Text] [Related]
12. De Novo Interpretation of MS/MS Spectra and Protein Identification via Database Searching.
Sheng QH; Xie T; Ding DF
Sheng Wu Hua Xue Yu Sheng Wu Wu Li Xue Bao (Shanghai); 2000; 32(6):595-600. PubMed ID: 12058170
[TBL] [Abstract][Full Text] [Related]
13. VEMS 3.0: algorithms and computational tools for tandem mass spectrometry based identification of post-translational modifications in proteins.
Matthiesen R; Trelle MB; Højrup P; Bunkenborg J; Jensen ON
J Proteome Res; 2005; 4(6):2338-47. PubMed ID: 16335983
[TBL] [Abstract][Full Text] [Related]
14. Algorithms for the de novo sequencing of peptides from tandem mass spectra.
Allmer J
Expert Rev Proteomics; 2011 Oct; 8(5):645-57. PubMed ID: 21999834
[TBL] [Abstract][Full Text] [Related]
15. Peptide sequence tags for fast database search in mass-spectrometry.
Frank A; Tanner S; Bafna V; Pevzner P
J Proteome Res; 2005; 4(4):1287-95. PubMed ID: 16083278
[TBL] [Abstract][Full Text] [Related]
16. Software for computational peptide identification from MS-MS data.
Xu C; Ma B
Drug Discov Today; 2006 Jul; 11(13-14):595-600. PubMed ID: 16793527
[TBL] [Abstract][Full Text] [Related]
17. Database independent detection of isotopically labeled MS/MS spectrum peptide pairs.
Potthast F; Ocenasek J; Rutishauser D; Pelikan M; Schlapbach R
J Chromatogr B Analyt Technol Biomed Life Sci; 2005 Mar; 817(2):225-30. PubMed ID: 15686989
[TBL] [Abstract][Full Text] [Related]
18. An algorithm for interpretation of low-energy collision-induced dissociation product ion spectra for de novo sequencing of peptides.
Zhong H; Li L
Rapid Commun Mass Spectrom; 2005; 19(8):1084-96. PubMed ID: 15803512
[TBL] [Abstract][Full Text] [Related]
19. Differential stable isotope labeling of peptides for quantitation and de novo sequence derivation.
Goodlett DR; Keller A; Watts JD; Newitt R; Yi EC; Purvine S; Eng JK; von Haller P; Aebersold R; Kolker E
Rapid Commun Mass Spectrom; 2001; 15(14):1214-21. PubMed ID: 11445905
[TBL] [Abstract][Full Text] [Related]
20. Shotgun protein sequencing by tandem mass spectra assembly.
Bandeira N; Tang H; Bafna V; Pevzner P
Anal Chem; 2004 Dec; 76(24):7221-33. PubMed ID: 15595863
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]