349 related articles for article (PubMed ID: 15080731)
21. Sequence similarity-driven proteomics in organisms with unknown genomes by LC-MS/MS and automated de novo sequencing.
Waridel P; Frank A; Thomas H; Surendranath V; Sunyaev S; Pevzner P; Shevchenko A
Proteomics; 2007 Jul; 7(14):2318-29. PubMed ID: 17623296
[TBL] [Abstract][Full Text] [Related]
22. Protein identification by spectral networks analysis.
Bandeira N
Methods Mol Biol; 2011; 694():151-68. PubMed ID: 21082434
[TBL] [Abstract][Full Text] [Related]
23. Discovering known and unanticipated protein modifications using MS/MS database searching.
Tang WH; Halpern BR; Shilov IV; Seymour SL; Keating SP; Loboda A; Patel AA; Schaeffer DA; Nuwaysir LM
Anal Chem; 2005 Jul; 77(13):3931-46. PubMed ID: 15987094
[TBL] [Abstract][Full Text] [Related]
24. De novo peptide sequencing by tandem MS using complementary CID and electron transfer dissociation.
Bertsch A; Leinenbach A; Pervukhin A; Lubeck M; Hartmer R; Baessmann C; Elnakady YA; Müller R; Böcker S; Huber CG; Kohlbacher O
Electrophoresis; 2009 Nov; 30(21):3736-47. PubMed ID: 19862751
[TBL] [Abstract][Full Text] [Related]
25. 'Information-Based-Acquisition' (IBA) technique with an ion-trap/time-of-flight mass spectrometer for high-throughput and reliable protein profiling.
Yokosuka T; Yoshinari K; Kobayashi K; Ohtake A; Hirabayashi A; Hashimoto Y; Waki I; Takao T
Rapid Commun Mass Spectrom; 2006; 20(17):2589-95. PubMed ID: 16897788
[TBL] [Abstract][Full Text] [Related]
26. Towards de novo identification of metabolites by analyzing tandem mass spectra.
Böcker S; Rasche F
Bioinformatics; 2008 Aug; 24(16):i49-i55. PubMed ID: 18689839
[TBL] [Abstract][Full Text] [Related]
27. Fast tandem mass spectra-based protein identification regardless of the number of spectra or potential modifications examined.
Falkner J; Andrews P
Bioinformatics; 2005 May; 21(10):2177-84. PubMed ID: 15746284
[TBL] [Abstract][Full Text] [Related]
28. The Mass Distance Fingerprint: a statistical framework for de novo detection of predominant modifications using high-accuracy mass spectrometry.
Potthast F; Gerrits B; Häkkinen J; Rutishauser D; Ahrens CH; Roschitzki B; Baerenfaller K; Munton RP; Walther P; Gehrig P; Seif P; Seeberger PH; Schlapbach R
J Chromatogr B Analyt Technol Biomed Life Sci; 2007 Jul; 854(1-2):173-82. PubMed ID: 17513179
[TBL] [Abstract][Full Text] [Related]
29. PepLine: a software pipeline for high-throughput direct mapping of tandem mass spectrometry data on genomic sequences.
Ferro M; Tardif M; Reguer E; Cahuzac R; Bruley C; Vermat T; Nugues E; Vigouroux M; Vandenbrouck Y; Garin J; Viari A
J Proteome Res; 2008 May; 7(5):1873-83. PubMed ID: 18348511
[TBL] [Abstract][Full Text] [Related]
30. Sequit: software for de novo peptide sequencing by matrix-assisted laser desorption/ionization post-source decay mass spectrometry.
Demine R; Walden P
Rapid Commun Mass Spectrom; 2004; 18(8):907-13. PubMed ID: 15095361
[TBL] [Abstract][Full Text] [Related]
31. Searching sequence databases via de novo peptide sequencing by tandem mass spectrometry.
Johnson RS; Taylor JA
Methods Mol Biol; 2000; 146():41-61. PubMed ID: 10948496
[No Abstract] [Full Text] [Related]
32. Protein and peptide identification algorithms using MS for use in high-throughput, automated pipelines.
Shadforth I; Crowther D; Bessant C
Proteomics; 2005 Nov; 5(16):4082-95. PubMed ID: 16196103
[TBL] [Abstract][Full Text] [Related]
33. Performance evaluation of existing de novo sequencing algorithms.
Pevtsov S; Fedulova I; Mirzaei H; Buck C; Zhang X
J Proteome Res; 2006 Nov; 5(11):3018-28. PubMed ID: 17081053
[TBL] [Abstract][Full Text] [Related]
34. Rapid 'de novo' peptide sequencing by a combination of nanoelectrospray, isotopic labeling and a quadrupole/time-of-flight mass spectrometer.
Shevchenko A; Chernushevich I; Ens W; Standing KG; Thomson B; Wilm M; Mann M
Rapid Commun Mass Spectrom; 1997; 11(9):1015-24. PubMed ID: 9204576
[TBL] [Abstract][Full Text] [Related]
35. AUDENS: a tool for automated peptide de novo sequencing.
Grossmann J; Roos FF; Cieliebak M; Lipták Z; Mathis LK; Müller M; Gruissem W; Baginsky S
J Proteome Res; 2005; 4(5):1768-74. PubMed ID: 16212431
[TBL] [Abstract][Full Text] [Related]
36. Composite sequence proteomic analysis of protein biomarkers of Campylobacter coli, C. lari and C. concisus for bacterial identification.
Fagerquist CK; Yee E; Miller WG
Analyst; 2007 Oct; 132(10):1010-23. PubMed ID: 17893805
[TBL] [Abstract][Full Text] [Related]
37. Toward high-throughput and reliable peptide identification via MS/MS spectra.
Liu J
Methods Mol Biol; 2008; 484():333-44. PubMed ID: 18592190
[TBL] [Abstract][Full Text] [Related]
38. Searching for hypothetical proteins: theory and practice based upon original data and literature.
Lubec G; Afjehi-Sadat L; Yang JW; John JP
Prog Neurobiol; 2005; 77(1-2):90-127. PubMed ID: 16271823
[TBL] [Abstract][Full Text] [Related]
39. Identification of post-translational modifications by blind search of mass spectra.
Tsur D; Tanner S; Zandi E; Bafna V; Pevzner PA
Nat Biotechnol; 2005 Dec; 23(12):1562-7. PubMed ID: 16311586
[TBL] [Abstract][Full Text] [Related]
40. pFind 2.0: a software package for peptide and protein identification via tandem mass spectrometry.
Wang LH; Li DQ; Fu Y; Wang HP; Zhang JF; Yuan ZF; Sun RX; Zeng R; He SM; Gao W
Rapid Commun Mass Spectrom; 2007; 21(18):2985-91. PubMed ID: 17702057
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
