200 related articles for article (PubMed ID: 15099839)
1. Continuous anisotropic representation of coarse-grained potentials for proteins by spherical harmonics synthesis.
Buchete NV; Straub JE; Thirumalai D
J Mol Graph Model; 2004 May; 22(5):441-50. PubMed ID: 15099839
[TBL] [Abstract][Full Text] [Related]
2. Orientational potentials extracted from protein structures improve native fold recognition.
Buchete NV; Straub JE; Thirumalai D
Protein Sci; 2004 Apr; 13(4):862-74. PubMed ID: 15044723
[TBL] [Abstract][Full Text] [Related]
3. Anisotropic effective interactions in a coarse-grained tube picture of proteins.
Banavar JR; Maritan A; Seno F
Proteins; 2002 Nov; 49(2):246-54. PubMed ID: 12211004
[TBL] [Abstract][Full Text] [Related]
4. Development of novel statistical potentials for protein fold recognition.
Buchete NV; Straub JE; Thirumalai D
Curr Opin Struct Biol; 2004 Apr; 14(2):225-32. PubMed ID: 15093838
[TBL] [Abstract][Full Text] [Related]
5. A consistent set of statistical potentials for quantifying local side-chain and backbone interactions.
Fang Q; Shortle D
Proteins; 2005 Jul; 60(1):90-6. PubMed ID: 15852305
[TBL] [Abstract][Full Text] [Related]
6. Coarse-grained protein model with residue orientation energies derived from atomic force fields.
Betancourt MR
J Phys Chem B; 2009 Nov; 113(44):14824-30. PubMed ID: 19817469
[TBL] [Abstract][Full Text] [Related]
7. A knowledge-based structure-discriminating function that requires only main-chain atom coordinates.
Makino Y; Itoh N
BMC Struct Biol; 2008 Oct; 8():46. PubMed ID: 18957132
[TBL] [Abstract][Full Text] [Related]
8. A coarse-grained protein force field for folding and structure prediction.
Maupetit J; Tuffery P; Derreumaux P
Proteins; 2007 Nov; 69(2):394-408. PubMed ID: 17600832
[TBL] [Abstract][Full Text] [Related]
9. Another look at the conditions for the extraction of protein knowledge-based potentials.
Betancourt MR
Proteins; 2009 Jul; 76(1):72-85. PubMed ID: 19089977
[TBL] [Abstract][Full Text] [Related]
10. Monte Carlo simulations of polyalanine using a reduced model and statistics-based interaction potentials.
van Giessen AE; Straub JE
J Chem Phys; 2005 Jan; 122(2):024904. PubMed ID: 15638627
[TBL] [Abstract][Full Text] [Related]
11. Analysis of anisotropic side-chain packing in proteins and application to high-resolution structure prediction.
Misura KM; Morozov AV; Baker D
J Mol Biol; 2004 Sep; 342(2):651-64. PubMed ID: 15327962
[TBL] [Abstract][Full Text] [Related]
12. Derivation of protein-specific pair potentials based on weak sequence fragment similarity.
Skolnick J; Kolinski A; Ortiz A
Proteins; 2000 Jan; 38(1):3-16. PubMed ID: 10651034
[TBL] [Abstract][Full Text] [Related]
13. Statistical potentials for improved structurally constrained evolutionary models.
Kleinman CL; Rodrigue N; Lartillot N; Philippe H
Mol Biol Evol; 2010 Jul; 27(7):1546-60. PubMed ID: 20159780
[TBL] [Abstract][Full Text] [Related]
14. Evaluation of coarse grained models for hydrogen bonds in proteins.
De Sancho D; Rey A
J Comput Chem; 2007 May; 28(7):1187-99. PubMed ID: 17299766
[TBL] [Abstract][Full Text] [Related]
15. Long- and short-range interactions in native protein structures are consistent/minimally frustrated in sequence space.
Miyazawa S; Jernigan RL
Proteins; 2003 Jan; 50(1):35-43. PubMed ID: 12471597
[TBL] [Abstract][Full Text] [Related]
16. Discriminative ability with respect to amino acid types: assessing the performance of knowledge-based potentials without threading.
Kuznetsov IB; Rackovsky S
Proteins; 2002 Nov; 49(2):266-84. PubMed ID: 12211006
[TBL] [Abstract][Full Text] [Related]
17. Pairwise energies for polypeptide coarse-grained models derived from atomic force fields.
Betancourt MR; Omovie SJ
J Chem Phys; 2009 May; 130(19):195103. PubMed ID: 19466867
[TBL] [Abstract][Full Text] [Related]
18. Coarse-grained simulation: a high-throughput computational approach to membrane proteins.
Sansom MS; Scott KA; Bond PJ
Biochem Soc Trans; 2008 Feb; 36(Pt 1):27-32. PubMed ID: 18208379
[TBL] [Abstract][Full Text] [Related]
19. Energy minimizations with a combination of two knowledge-based potentials for protein folding.
de Sancho D; Rey A
J Comput Chem; 2008 Jul; 29(10):1684-92. PubMed ID: 18351603
[TBL] [Abstract][Full Text] [Related]
20. Coarse-grained interaction potentials for anisotropic molecules.
Babadi M; Everaers R; Ejtehadi MR
J Chem Phys; 2006 May; 124(17):174708. PubMed ID: 16689591
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
