346 related articles for article (PubMed ID: 15103614)
1. Polyproline II helix is the preferred conformation for unfolded polyalanine in water.
Mezei M; Fleming PJ; Srinivasan R; Rose GD
Proteins; 2004 May; 55(3):502-7. PubMed ID: 15103614
[TBL] [Abstract][Full Text] [Related]
2. Free energy landscape of protein folding in water: explicit vs. implicit solvent.
Zhou R
Proteins; 2003 Nov; 53(2):148-61. PubMed ID: 14517967
[TBL] [Abstract][Full Text] [Related]
3. Unfolded state of polyalanine is a segmented polyproline II helix.
Kentsis A; Mezei M; Gindin T; Osman R
Proteins; 2004 May; 55(3):493-501. PubMed ID: 15103613
[TBL] [Abstract][Full Text] [Related]
4. Side-chain entropy effects on protein secondary structure formation.
Chellgren BW; Creamer TP
Proteins; 2006 Feb; 62(2):411-20. PubMed ID: 16315271
[TBL] [Abstract][Full Text] [Related]
5. Conformational analysis of endothelin-1: effects of solvation free energy.
Hempel JC; Fine RM; Hassan M; Ghoul W; Guaragna A; Koerber SC; Li Z; Hagler AT
Biopolymers; 1995 Sep; 36(3):283-301. PubMed ID: 7669916
[TBL] [Abstract][Full Text] [Related]
6. The effect of aqueous solvation upon alpha-helix formation for polyalanines.
Salvador P; Asensio A; Dannenberg JJ
J Phys Chem B; 2007 Jun; 111(25):7462-6. PubMed ID: 17552560
[TBL] [Abstract][Full Text] [Related]
7. Structural properties of hydration shell around various conformations of simple polypeptides.
Czapiewski D; Zielkiewicz J
J Phys Chem B; 2010 Apr; 114(13):4536-50. PubMed ID: 20232827
[TBL] [Abstract][Full Text] [Related]
8. A solvent model for simulations of peptides in bilayers. I. Membrane-promoting alpha-helix formation.
Efremov RG; Nolde DE; Vergoten G; Arseniev AS
Biophys J; 1999 May; 76(5):2448-59. PubMed ID: 10233062
[TBL] [Abstract][Full Text] [Related]
9. Role of solvent in determining conformational preferences of alanine dipeptide in water.
Drozdov AN; Grossfield A; Pappu RV
J Am Chem Soc; 2004 Mar; 126(8):2574-81. PubMed ID: 14982467
[TBL] [Abstract][Full Text] [Related]
10. A molecular dynamics study of the correlations between solvent-accessible surface, molecular volume, and folding state.
Floriano WB; Domont GB; Nascimento MA
J Phys Chem B; 2007 Feb; 111(7):1893-9. PubMed ID: 17261064
[TBL] [Abstract][Full Text] [Related]
11. Free energy surfaces of beta-hairpin and alpha-helical peptides generated by replica exchange molecular dynamics with the AGBNP implicit solvent model.
Felts AK; Harano Y; Gallicchio E; Levy RM
Proteins; 2004 Aug; 56(2):310-21. PubMed ID: 15211514
[TBL] [Abstract][Full Text] [Related]
12. Molecular dynamics simulations of folding processes of a beta-hairpin in an implicit solvent.
Chen C; Xiao Y
Phys Biol; 2006 Aug; 3(3):161-71. PubMed ID: 17021380
[TBL] [Abstract][Full Text] [Related]
13. Free energy landscapes of peptides by enhanced conformational sampling.
Nakajima N; Higo J; Kidera A; Nakamura H
J Mol Biol; 2000 Feb; 296(1):197-216. PubMed ID: 10656827
[TBL] [Abstract][Full Text] [Related]
14. Rapid boundary element solvation electrostatics calculations in folding simulations: successful folding of a 23-residue peptide.
Totrov M; Abagyan R
Biopolymers; 2001; 60(2):124-33. PubMed ID: 11455546
[TBL] [Abstract][Full Text] [Related]
15. The solvation interface is a determining factor in peptide conformational preferences.
Sorin EJ; Rhee YM; Shirts MR; Pande VS
J Mol Biol; 2006 Feb; 356(1):248-56. PubMed ID: 16364361
[TBL] [Abstract][Full Text] [Related]
16. How well does Poisson-Boltzmann implicit solvent agree with explicit solvent? A quantitative analysis.
Tan C; Yang L; Luo R
J Phys Chem B; 2006 Sep; 110(37):18680-7. PubMed ID: 16970499
[TBL] [Abstract][Full Text] [Related]
17. Density functional theory of solvation and its relation to implicit solvent models.
Ramirez R; Borgis D
J Phys Chem B; 2005 Apr; 109(14):6754-63. PubMed ID: 16851760
[TBL] [Abstract][Full Text] [Related]
18. Free-energy landscape for beta hairpin folding from combined parallel tempering and metadynamics.
Bussi G; Gervasio FL; Laio A; Parrinello M
J Am Chem Soc; 2006 Oct; 128(41):13435-41. PubMed ID: 17031956
[TBL] [Abstract][Full Text] [Related]
19. Solvation model based on order parameters and a fast sampling method for the calculation of the solvation free energies of peptides.
Gu C; Lustig S; Trout BL
J Phys Chem B; 2006 Jan; 110(3):1476-84. PubMed ID: 16471699
[TBL] [Abstract][Full Text] [Related]
20. Non-arrhenius behavior in the unfolding of a short, hydrophobic alpha-helix. Complementarity of molecular dynamics and lattice model simulations.
Collet O; Chipot C
J Am Chem Soc; 2003 May; 125(21):6573-80. PubMed ID: 12785798
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]