501 related articles for article (PubMed ID: 15129285)
1. Integrating high-throughput and computational data elucidates bacterial networks.
Covert MW; Knight EM; Reed JL; Herrgard MJ; Palsson BO
Nature; 2004 May; 429(6987):92-6. PubMed ID: 15129285
[TBL] [Abstract][Full Text] [Related]
2. The condition-dependent transcriptional network in Escherichia coli.
Lemmens K; De Bie T; Dhollander T; Monsieurs P; De Moor B; Collado-Vides J; Engelen K; Marchal K
Ann N Y Acad Sci; 2009 Mar; 1158():29-35. PubMed ID: 19348629
[TBL] [Abstract][Full Text] [Related]
3. In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data.
Edwards JS; Ibarra RU; Palsson BO
Nat Biotechnol; 2001 Feb; 19(2):125-30. PubMed ID: 11175725
[TBL] [Abstract][Full Text] [Related]
4. Effect of weight-added regulatory networks on constraint-based metabolic models of Escherichia coli.
Lee SG; Park JH; Hou BK; Kim YH; Kim CM; Hwang KS
Biosystems; 2007; 90(3):843-55. PubMed ID: 17640796
[TBL] [Abstract][Full Text] [Related]
5. Validation of qualitative models of genetic regulatory networks by model checking: analysis of the nutritional stress response in Escherichia coli.
Batt G; Ropers D; de Jong H; Geiselmann J; Mateescu R; Page M; Schneider D
Bioinformatics; 2005 Jun; 21 Suppl 1():i19-28. PubMed ID: 15961457
[TBL] [Abstract][Full Text] [Related]
6. Genome-scale reconstruction and in silico analysis of the Clostridium acetobutylicum ATCC 824 metabolic network.
Lee J; Yun H; Feist AM; Palsson BØ; Lee SY
Appl Microbiol Biotechnol; 2008 Oct; 80(5):849-62. PubMed ID: 18758767
[TBL] [Abstract][Full Text] [Related]
7. Reconstruction of metabolic networks from high-throughput metabolite profiling data: in silico analysis of red blood cell metabolism.
Nemenman I; Escola GS; Hlavacek WS; Unkefer PJ; Unkefer CJ; Wall ME
Ann N Y Acad Sci; 2007 Dec; 1115():102-15. PubMed ID: 17925356
[TBL] [Abstract][Full Text] [Related]
8. Design and application of genome-scale reconstructed metabolic models.
Rocha I; Förster J; Nielsen J
Methods Mol Biol; 2008; 416():409-31. PubMed ID: 18392985
[TBL] [Abstract][Full Text] [Related]
9. DEEP--a tool for differential expression effector prediction.
Degenhardt J; Haubrock M; Dönitz J; Wingender E; Crass T
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W619-24. PubMed ID: 17584786
[TBL] [Abstract][Full Text] [Related]
10. Genome-scale in silico aided metabolic analysis and flux comparisons of Escherichia coli to improve succinate production.
Wang Q; Chen X; Yang Y; Zhao X
Appl Microbiol Biotechnol; 2006 Dec; 73(4):887-94. PubMed ID: 16927085
[TBL] [Abstract][Full Text] [Related]
11. Genome-scale metabolic network analysis of the opportunistic pathogen Pseudomonas aeruginosa PAO1.
Oberhardt MA; Puchałka J; Fryer KE; Martins dos Santos VA; Papin JA
J Bacteriol; 2008 Apr; 190(8):2790-803. PubMed ID: 18192387
[TBL] [Abstract][Full Text] [Related]
12. Metabolic network structure determines key aspects of functionality and regulation.
Stelling J; Klamt S; Bettenbrock K; Schuster S; Gilles ED
Nature; 2002 Nov; 420(6912):190-3. PubMed ID: 12432396
[TBL] [Abstract][Full Text] [Related]
13. Reconstruction of microbial transcriptional regulatory networks.
Herrgård MJ; Covert MW; Palsson BØ
Curr Opin Biotechnol; 2004 Feb; 15(1):70-7. PubMed ID: 15102470
[TBL] [Abstract][Full Text] [Related]
14. Gene expression trends and protein features effectively complement each other in gene function prediction.
Wabnik K; Hvidsten TR; Kedzierska A; Van Leene J; De Jaeger G; Beemster GT; Komorowski J; Kuiper MT
Bioinformatics; 2009 Feb; 25(3):322-30. PubMed ID: 19050035
[TBL] [Abstract][Full Text] [Related]
15. Where are we in genomics?
Hocquette JF
J Physiol Pharmacol; 2005 Jun; 56 Suppl 3():37-70. PubMed ID: 16077195
[TBL] [Abstract][Full Text] [Related]
16. Flagellar biosynthesis in silico: building quantitative models of regulatory networks.
Herrgård MJ; Palsson BØ
Cell; 2004 Jun; 117(6):689-90. PubMed ID: 15186769
[TBL] [Abstract][Full Text] [Related]
17. Properties of metabolic networks: structure versus function.
Mahadevan R; Palsson BO
Biophys J; 2005 Jan; 88(1):L07-9. PubMed ID: 15574705
[TBL] [Abstract][Full Text] [Related]
18. From genomes to in silico cells via metabolic networks.
Borodina I; Nielsen J
Curr Opin Biotechnol; 2005 Jun; 16(3):350-5. PubMed ID: 15961036
[TBL] [Abstract][Full Text] [Related]
19. A declarative constraint-based method for analyzing discrete genetic regulatory networks.
Corblin F; Tripodi S; Fanchon E; Ropers D; Trilling L
Biosystems; 2009 Nov; 98(2):91-104. PubMed ID: 19664681
[TBL] [Abstract][Full Text] [Related]
20. Systematic assignment of thermodynamic constraints in metabolic network models.
Kümmel A; Panke S; Heinemann M
BMC Bioinformatics; 2006 Nov; 7():512. PubMed ID: 17123434
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
