124 related articles for article (PubMed ID: 15137914)
1. Computational identification of transcription factor binding sites by functional analysis of sets of genes sharing overrepresented upstream motifs.
Corà D; Di Cunto F; Provero P; Silengo L; Caselle M
BMC Bioinformatics; 2004 May; 5():57. PubMed ID: 15137914
[TBL] [Abstract][Full Text] [Related]
2. Correlating overrepresented upstream motifs to gene expression: a computational approach to regulatory element discovery in eukaryotes.
Caselle M; Di Cunto F; Provero P
BMC Bioinformatics; 2002; 3():7. PubMed ID: 11876822
[TBL] [Abstract][Full Text] [Related]
3. Ab initio identification of putative human transcription factor binding sites by comparative genomics.
Corà D; Herrmann C; Dieterich C; Di Cunto F; Provero P; Caselle M
BMC Bioinformatics; 2005 May; 6():110. PubMed ID: 15865625
[TBL] [Abstract][Full Text] [Related]
4. Position specific variation in the rate of evolution in transcription factor binding sites.
Moses AM; Chiang DY; Kellis M; Lander ES; Eisen MB
BMC Evol Biol; 2003 Aug; 3():19. PubMed ID: 12946282
[TBL] [Abstract][Full Text] [Related]
5. Integrating genomic data to predict transcription factor binding.
Holloway DT; Kon M; DeLisi C
Genome Inform; 2005; 16(1):83-94. PubMed ID: 16362910
[TBL] [Abstract][Full Text] [Related]
6. Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae.
Hughes JD; Estep PW; Tavazoie S; Church GM
J Mol Biol; 2000 Mar; 296(5):1205-14. PubMed ID: 10698627
[TBL] [Abstract][Full Text] [Related]
7. Identification of modules in Aspergillus niger by gene co-expression network analysis.
van den Berg RA; Braaksma M; van der Veen D; van der Werf MJ; Punt PJ; van der Oost J; de Graaff LH
Fungal Genet Biol; 2010 Jun; 47(6):539-50. PubMed ID: 20350613
[TBL] [Abstract][Full Text] [Related]
8. A computational "genome walk" technique to identify regulatory interactions in gene networks.
Wagner A
Pac Symp Biocomput; 1998; ():264-78. PubMed ID: 9697188
[TBL] [Abstract][Full Text] [Related]
9. Discovering novel cis-regulatory motifs using functional networks.
Ettwiller LM; Rung J; Birney E
Genome Res; 2003 May; 13(5):883-95. PubMed ID: 12727907
[TBL] [Abstract][Full Text] [Related]
10. Comprehensive search for HNF-1beta-regulated genes in mouse hepatoma cells perturbed by transcription regulatory factor-targeted RNAi.
Tanaka T; Tomaru Y; Nomura Y; Miura H; Suzuki M; Hayashizaki Y
Nucleic Acids Res; 2004; 32(9):2740-50. PubMed ID: 15148361
[TBL] [Abstract][Full Text] [Related]
11. Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies.
van Helden J; André B; Collado-Vides J
J Mol Biol; 1998 Sep; 281(5):827-42. PubMed ID: 9719638
[TBL] [Abstract][Full Text] [Related]
12. Defining transcriptional networks through integrative modeling of mRNA expression and transcription factor binding data.
Gao F; Foat BC; Bussemaker HJ
BMC Bioinformatics; 2004 Mar; 5():31. PubMed ID: 15113405
[TBL] [Abstract][Full Text] [Related]
13. Characterization of complex regulatory networks and identification of promoter regulatory elements in yeast: "in silico" and "wet-lab" approaches.
Mira NP; Teixeira MC; Sá-Correia I
Methods Mol Biol; 2012; 809():27-48. PubMed ID: 22113266
[TBL] [Abstract][Full Text] [Related]
14. Gene structure and organization of the human beta-secretase (BACE) promoter.
Sambamurti K; Kinsey R; Maloney B; Ge YW; Lahiri DK
FASEB J; 2004 Jun; 18(9):1034-6. PubMed ID: 15059975
[TBL] [Abstract][Full Text] [Related]
15. Transcriptional regulation of the mouse PNRC2 promoter by the nuclear factor Y (NFY) and E2F1.
Zhou D; Masri S; Ye JJ; Chen S
Gene; 2005 Nov; 361():89-100. PubMed ID: 16181749
[TBL] [Abstract][Full Text] [Related]
16. Identification and analysis of the human neural polypyrimidine tract binding protein (nPTB) gene promoter region.
Romanelli MG; Lorenzi P; Morandi C
Gene; 2005 Aug; 356():11-8. PubMed ID: 16002244
[TBL] [Abstract][Full Text] [Related]
17. Candidate regulatory sequence elements for cell cycle-dependent transcription in Saccharomyces cerevisiae.
Wolfsberg TG; Gabrielian AE; Campbell MJ; Cho RJ; Spouge JL; Landsman D
Genome Res; 1999 Aug; 9(8):775-92. PubMed ID: 10447512
[TBL] [Abstract][Full Text] [Related]
18. Identification of specific sequence motifs in the upstream region of 242 human miRNA genes.
Inouchi A; Shinohara S; Inoue H; Kita K; Itakura M
Comput Biol Chem; 2007 Jun; 31(3):207-14. PubMed ID: 17499549
[TBL] [Abstract][Full Text] [Related]
19. Transcriptional regulatory networks in Saccharomyces cerevisiae.
Lee TI; Rinaldi NJ; Robert F; Odom DT; Bar-Joseph Z; Gerber GK; Hannett NM; Harbison CT; Thompson CM; Simon I; Zeitlinger J; Jennings EG; Murray HL; Gordon DB; Ren B; Wyrick JJ; Tagne JB; Volkert TL; Fraenkel E; Gifford DK; Young RA
Science; 2002 Oct; 298(5594):799-804. PubMed ID: 12399584
[TBL] [Abstract][Full Text] [Related]
20. Transcription factor GCN4 for control of amino acid biosynthesis also regulates the expression of the gene for lipoamide dehydrogenase.
Zaman Z; Bowman SB; Kornfeld GD; Brown AJ; Dawes IW
Biochem J; 1999 Jun; 340 ( Pt 3)(Pt 3):855-62. PubMed ID: 10359673
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
