865 related articles for article (PubMed ID: 15141216)
1. A conformational switch controls hepatitis delta virus ribozyme catalysis.
Ke A; Zhou K; Ding F; Cate JH; Doudna JA
Nature; 2004 May; 429(6988):201-5. PubMed ID: 15141216
[TBL] [Abstract][Full Text] [Related]
2. Magnesium dependence of the amplified conformational switch in the trans-acting hepatitis delta virus ribozyme.
Tinsley RA; Harris DA; Walter NG
Biochemistry; 2004 Jul; 43(28):8935-45. PubMed ID: 15248751
[TBL] [Abstract][Full Text] [Related]
3. Structural dynamics of precursor and product of the RNA enzyme from the hepatitis delta virus as revealed by molecular dynamics simulations.
Krasovska MV; Sefcikova J; Spacková N; Sponer J; Walter NG
J Mol Biol; 2005 Aug; 351(4):731-48. PubMed ID: 16045932
[TBL] [Abstract][Full Text] [Related]
4. Terbium-mediated footprinting probes a catalytic conformational switch in the antigenomic hepatitis delta virus ribozyme.
Harris DA; Tinsley RA; Walter NG
J Mol Biol; 2004 Aug; 341(2):389-403. PubMed ID: 15276831
[TBL] [Abstract][Full Text] [Related]
5. Structural roles of monovalent cations in the HDV ribozyme.
Ke A; Ding F; Batchelor JD; Doudna JA
Structure; 2007 Mar; 15(3):281-7. PubMed ID: 17355864
[TBL] [Abstract][Full Text] [Related]
6. Mechanistic characterization of the HDV genomic ribozyme: classifying the catalytic and structural metal ion sites within a multichannel reaction mechanism.
Nakano S; Cerrone AL; Bevilacqua PC
Biochemistry; 2003 Mar; 42(10):2982-94. PubMed ID: 12627964
[TBL] [Abstract][Full Text] [Related]
7. A pH-sensitive RNA tertiary interaction affects self-cleavage activity of the HDV ribozymes in the absence of added divalent metal ion.
Wadkins TS; Shih I; Perrotta AT; Been MD
J Mol Biol; 2001 Feb; 305(5):1045-55. PubMed ID: 11162113
[TBL] [Abstract][Full Text] [Related]
8. HDV ribozyme activity in monovalent cations.
Perrotta AT; Been MD
Biochemistry; 2006 Sep; 45(38):11357-65. PubMed ID: 16981696
[TBL] [Abstract][Full Text] [Related]
9. Crystal structure of a hepatitis delta virus ribozyme.
Ferré-D'Amaré AR; Zhou K; Doudna JA
Nature; 1998 Oct; 395(6702):567-74. PubMed ID: 9783582
[TBL] [Abstract][Full Text] [Related]
10. Catalytic core structure of the trans-acting HDV ribozyme is subtly influenced by sequence variation outside the core.
Gondert ME; Tinsley RA; Rueda D; Walter NG
Biochemistry; 2006 Jun; 45(24):7563-73. PubMed ID: 16768452
[TBL] [Abstract][Full Text] [Related]
11. Catalytic strategies of self-cleaving ribozymes.
Cochrane JC; Strobel SA
Acc Chem Res; 2008 Aug; 41(8):1027-35. PubMed ID: 18652494
[TBL] [Abstract][Full Text] [Related]
12. Ribozymes of the hepatitis delta virus: recent findings on their structure, mechanism of catalysis and possible applications.
Ciesiolka J; Wrzesinski J; Legiewicz M; Smólska B; Dutkiewicz M
Acta Biochim Pol; 2001; 48(2):409-18. PubMed ID: 11732611
[TBL] [Abstract][Full Text] [Related]
13. Catalytic strategies of the hepatitis delta virus ribozymes.
Shih IH; Been MD
Annu Rev Biochem; 2002; 71():887-917. PubMed ID: 12045114
[TBL] [Abstract][Full Text] [Related]
14. A single nucleotide linked to a switch in metal ion reactivity preference in the HDV ribozymes.
Perrotta AT; Been MD
Biochemistry; 2007 May; 46(17):5124-30. PubMed ID: 17417876
[TBL] [Abstract][Full Text] [Related]
15. Direct measurement of a pK(a) near neutrality for the catalytic cytosine in the genomic HDV ribozyme using Raman crystallography.
Gong B; Chen JH; Chase E; Chadalavada DM; Yajima R; Golden BL; Bevilacqua PC; Carey PR
J Am Chem Soc; 2007 Oct; 129(43):13335-42. PubMed ID: 17924627
[TBL] [Abstract][Full Text] [Related]
16. The folding pathway of the genomic hepatitis delta virus ribozyme is dominated by slow folding of the pseudoknots.
Chadalavada DM; Senchak SE; Bevilacqua PC
J Mol Biol; 2002 Apr; 317(4):559-75. PubMed ID: 11955009
[TBL] [Abstract][Full Text] [Related]
17. A toggle duplex in hepatitis delta virus self-cleaving RNA that stabilizes an inactive and a salt-dependent pro-active ribozyme conformation.
Perrotta AT; Been MD
J Mol Biol; 1998 Jun; 279(2):361-73. PubMed ID: 9642043
[TBL] [Abstract][Full Text] [Related]
18. Impact of an extruded nucleotide on cleavage activity and dynamic catalytic core conformation of the hepatitis delta virus ribozyme.
Sefcikova J; Krasovska MV; Spacková N; Sponer J; Walter NG
Biopolymers; 2007 Apr 5-15; 85(5-6):392-406. PubMed ID: 17253610
[TBL] [Abstract][Full Text] [Related]
19. Theoretical examination of two opposite mechanisms proposed for hepatitis delta virus ribozyme.
Wei K; Liu L; Cheng YH; Fu Y; Guo QX
J Phys Chem B; 2007 Feb; 111(7):1514-6. PubMed ID: 17263576
[TBL] [Abstract][Full Text] [Related]
20. General acid catalysis by the hepatitis delta virus ribozyme.
Das SR; Piccirilli JA
Nat Chem Biol; 2005 Jun; 1(1):45-52. PubMed ID: 16407993
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]