BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

282 related articles for article (PubMed ID: 15154744)

  • 1. Virtual screening using protein-ligand docking: avoiding artificial enrichment.
    Verdonk ML; Berdini V; Hartshorn MJ; Mooij WT; Murray CW; Taylor RD; Watson P
    J Chem Inf Comput Sci; 2004; 44(3):793-806. PubMed ID: 15154744
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Comparison of structure- and ligand-based virtual screening protocols considering hit list complementarity and enrichment factors.
    Krüger DM; Evers A
    ChemMedChem; 2010 Jan; 5(1):148-58. PubMed ID: 19908272
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Improved protein-ligand docking using GOLD.
    Verdonk ML; Cole JC; Hartshorn MJ; Murray CW; Taylor RD
    Proteins; 2003 Sep; 52(4):609-23. PubMed ID: 12910460
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Lead finder: an approach to improve accuracy of protein-ligand docking, binding energy estimation, and virtual screening.
    Stroganov OV; Novikov FN; Stroylov VS; Kulkov V; Chilov GG
    J Chem Inf Model; 2008 Dec; 48(12):2371-85. PubMed ID: 19007114
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Virtual screening of biogenic amine-binding G-protein coupled receptors: comparative evaluation of protein- and ligand-based virtual screening protocols.
    Evers A; Hessler G; Matter H; Klabunde T
    J Med Chem; 2005 Aug; 48(17):5448-65. PubMed ID: 16107144
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Ranking targets in structure-based virtual screening of three-dimensional protein libraries: methods and problems.
    Kellenberger E; Foata N; Rognan D
    J Chem Inf Model; 2008 May; 48(5):1014-25. PubMed ID: 18412328
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Impact of scoring functions on enrichment in docking-based virtual screening: an application study on renin inhibitors.
    Krovat EM; Langer T
    J Chem Inf Comput Sci; 2004; 44(3):1123-9. PubMed ID: 15154781
    [TBL] [Abstract][Full Text] [Related]  

  • 8. SeleX-CS: a new consensus scoring algorithm for hit discovery and lead optimization.
    Bar-Haim S; Aharon A; Ben-Moshe T; Marantz Y; Senderowitz H
    J Chem Inf Model; 2009 Mar; 49(3):623-33. PubMed ID: 19231809
    [TBL] [Abstract][Full Text] [Related]  

  • 9. A detailed comparison of current docking and scoring methods on systems of pharmaceutical relevance.
    Perola E; Walters WP; Charifson PS
    Proteins; 2004 Aug; 56(2):235-49. PubMed ID: 15211508
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Investigation of MM-PBSA rescoring of docking poses.
    Thompson DC; Humblet C; Joseph-McCarthy D
    J Chem Inf Model; 2008 May; 48(5):1081-91. PubMed ID: 18465849
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Virtual screening to enrich a compound collection with CDK2 inhibitors using docking, scoring, and composite scoring models.
    Cotesta S; Giordanetto F; Trosset JY; Crivori P; Kroemer RT; Stouten PF; Vulpetti A
    Proteins; 2005 Sep; 60(4):629-43. PubMed ID: 16028223
    [TBL] [Abstract][Full Text] [Related]  

  • 12. General and targeted statistical potentials for protein-ligand interactions.
    Mooij WT; Verdonk ML
    Proteins; 2005 Nov; 61(2):272-87. PubMed ID: 16106379
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Structure-based virtual screening with supervised consensus scoring: evaluation of pose prediction and enrichment factors.
    Teramoto R; Fukunishi H
    J Chem Inf Model; 2008 Apr; 48(4):747-54. PubMed ID: 18318474
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Comparative assessment of scoring functions on a diverse test set.
    Cheng T; Li X; Li Y; Liu Z; Wang R
    J Chem Inf Model; 2009 Apr; 49(4):1079-93. PubMed ID: 19358517
    [TBL] [Abstract][Full Text] [Related]  

  • 15. FLAP: GRID molecular interaction fields in virtual screening. validation using the DUD data set.
    Cross S; Baroni M; Carosati E; Benedetti P; Clementi S
    J Chem Inf Model; 2010 Aug; 50(8):1442-50. PubMed ID: 20690627
    [TBL] [Abstract][Full Text] [Related]  

  • 16. ConsDock: A new program for the consensus analysis of protein-ligand interactions.
    Paul N; Rognan D
    Proteins; 2002 Jun; 47(4):521-33. PubMed ID: 12001231
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Comparison of several molecular docking programs: pose prediction and virtual screening accuracy.
    Cross JB; Thompson DC; Rai BK; Baber JC; Fan KY; Hu Y; Humblet C
    J Chem Inf Model; 2009 Jun; 49(6):1455-74. PubMed ID: 19476350
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Protein-ligand docking against non-native protein conformers.
    Verdonk ML; Mortenson PN; Hall RJ; Hartshorn MJ; Murray CW
    J Chem Inf Model; 2008 Nov; 48(11):2214-25. PubMed ID: 18954138
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Evaluations of molecular docking programs for virtual screening.
    Onodera K; Satou K; Hirota H
    J Chem Inf Model; 2007; 47(4):1609-18. PubMed ID: 17602548
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Structure-based virtual ligand screening with LigandFit: pose prediction and enrichment of compound collections.
    Montes M; Miteva MA; Villoutreix BO
    Proteins; 2007 Aug; 68(3):712-25. PubMed ID: 17510958
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 15.