132 related articles for article (PubMed ID: 15158471)
1. Improved and automated prediction of effective siRNA.
Chalk AM; Wahlestedt C; Sonnhammer EL
Biochem Biophys Res Commun; 2004 Jun; 319(1):264-74. PubMed ID: 15158471
[TBL] [Abstract][Full Text] [Related]
2. RFRCDB-siRNA: improved design of siRNAs by random forest regression model coupled with database searching.
Jiang P; Wu H; Da Y; Sang F; Wei J; Sun X; Lu Z
Comput Methods Programs Biomed; 2007 Sep; 87(3):230-8. PubMed ID: 17644215
[TBL] [Abstract][Full Text] [Related]
3. siRNA Selection Server: an automated siRNA oligonucleotide prediction server.
Yuan B; Latek R; Hossbach M; Tuschl T; Lewitter F
Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W130-4. PubMed ID: 15215365
[TBL] [Abstract][Full Text] [Related]
4. siDRM: an effective and generally applicable online siRNA design tool.
Gong W; Ren Y; Zhou H; Wang Y; Kang S; Li T
Bioinformatics; 2008 Oct; 24(20):2405-6. PubMed ID: 18718944
[TBL] [Abstract][Full Text] [Related]
5. Efficient RNAi-based gene family knockdown via set cover optimization.
Zhao W; Fanning ML; Lane T
Artif Intell Med; 2005; 35(1-2):61-73. PubMed ID: 16084706
[TBL] [Abstract][Full Text] [Related]
6. siRNAdb: a database of siRNA sequences.
Chalk AM; Warfinge RE; Georgii-Hemming P; Sonnhammer EL
Nucleic Acids Res; 2005 Jan; 33(Database issue):D131-4. PubMed ID: 15608162
[TBL] [Abstract][Full Text] [Related]
7. Designing effective siRNAs with off-target control.
Snøve O; Nedland M; Fjeldstad SH; Humberset H; Birkeland OR; Grünfeld T; Saetrom P
Biochem Biophys Res Commun; 2004 Dec; 325(3):769-73. PubMed ID: 15541356
[TBL] [Abstract][Full Text] [Related]
8. Designing optimal siRNA based on target site accessibility.
Hofacker IL; Tafer H
Methods Mol Biol; 2010; 623():137-54. PubMed ID: 20217549
[TBL] [Abstract][Full Text] [Related]
9. Integrated siRNA design based on surveying of features associated with high RNAi effectiveness.
Gong W; Ren Y; Xu Q; Wang Y; Lin D; Zhou H; Li T
BMC Bioinformatics; 2006 Nov; 7():516. PubMed ID: 17129386
[TBL] [Abstract][Full Text] [Related]
10. Computational models with thermodynamic and composition features improve siRNA design.
Shabalina SA; Spiridonov AN; Ogurtsov AY
BMC Bioinformatics; 2006 Feb; 7():65. PubMed ID: 16472402
[TBL] [Abstract][Full Text] [Related]
11. Prediction of siRNA knockdown efficiency using artificial neural network models.
Ge G; Wong GW; Luo B
Biochem Biophys Res Commun; 2005 Oct; 336(2):723-8. PubMed ID: 16153609
[TBL] [Abstract][Full Text] [Related]
12. Predicting the efficacy of short oligonucleotides in antisense and RNAi experiments with boosted genetic programming.
Saetrom P
Bioinformatics; 2004 Nov; 20(17):3055-63. PubMed ID: 15201190
[TBL] [Abstract][Full Text] [Related]
13. Design of active small interfering RNAs.
Peek AS; Behlke MA
Curr Opin Mol Ther; 2007 Apr; 9(2):110-8. PubMed ID: 17458163
[TBL] [Abstract][Full Text] [Related]
14. Design and validation of siRNAs and shRNAs.
Tilesi F; Fradiani P; Socci V; Willems D; Ascenzioni F
Curr Opin Mol Ther; 2009 Apr; 11(2):156-64. PubMed ID: 19330721
[TBL] [Abstract][Full Text] [Related]
15. Design of a genome-wide siRNA library using an artificial neural network.
Huesken D; Lange J; Mickanin C; Weiler J; Asselbergs F; Warner J; Meloon B; Engel S; Rosenberg A; Cohen D; Labow M; Reinhardt M; Natt F; Hall J
Nat Biotechnol; 2005 Aug; 23(8):995-1001. PubMed ID: 16025102
[TBL] [Abstract][Full Text] [Related]
16. Locked nucleic acid (LNA) mediated improvements in siRNA stability and functionality.
Elmén J; Thonberg H; Ljungberg K; Frieden M; Westergaard M; Xu Y; Wahren B; Liang Z; Ørum H; Koch T; Wahlestedt C
Nucleic Acids Res; 2005; 33(1):439-47. PubMed ID: 15653644
[TBL] [Abstract][Full Text] [Related]
17. A comparison of siRNA efficacy predictors.
Saetrom P; Snøve O
Biochem Biophys Res Commun; 2004 Aug; 321(1):247-53. PubMed ID: 15358242
[TBL] [Abstract][Full Text] [Related]
18. Selecting effective siRNA target sequences by using Bayes' theorem.
Takasaki S
Comput Biol Chem; 2009 Oct; 33(5):368-72. PubMed ID: 19682951
[TBL] [Abstract][Full Text] [Related]
19. High-throughput screening of effective siRNAs from RNAi libraries delivered via bacterial invasion.
Zhao HF; L'Abbé D; Jolicoeur N; Wu M; Li Z; Yu Z; Shen SH
Nat Methods; 2005 Dec; 2(12):967-73. PubMed ID: 16299483
[TBL] [Abstract][Full Text] [Related]
20. Unravelling the general properties of siRNAs: strength in numbers and lessons from the past.
Hall J
Nat Rev Genet; 2004 Jul; 5(7):552-7. PubMed ID: 15211357
[No Abstract] [Full Text] [Related]
[Next] [New Search]
