249 related articles for article (PubMed ID: 15180907)
1. Evaluation of several lightweight stochastic context-free grammars for RNA secondary structure prediction.
Dowell RD; Eddy SR
BMC Bioinformatics; 2004 Jun; 5():71. PubMed ID: 15180907
[TBL] [Abstract][Full Text] [Related]
2. Evaluation of a sophisticated SCFG design for RNA secondary structure prediction.
Nebel ME; Scheid A
Theory Biosci; 2011 Dec; 130(4):313-36. PubMed ID: 22135038
[TBL] [Abstract][Full Text] [Related]
3. SCFGs in RNA secondary structure prediction RNA secondary structure prediction: a hands-on approach.
Sükösd Z; Andersen ES; Lyngsø R
Methods Mol Biol; 2014; 1097():143-62. PubMed ID: 24639159
[TBL] [Abstract][Full Text] [Related]
4. CONTRAfold: RNA secondary structure prediction without physics-based models.
Do CB; Woods DA; Batzoglou S
Bioinformatics; 2006 Jul; 22(14):e90-8. PubMed ID: 16873527
[TBL] [Abstract][Full Text] [Related]
5. Evolving stochastic context--free grammars for RNA secondary structure prediction.
Wj Anderson J; Tataru P; Staines J; Hein J; Lyngsø R
BMC Bioinformatics; 2012 May; 13():78. PubMed ID: 22559985
[TBL] [Abstract][Full Text] [Related]
6. Introduction to stochastic context free grammars.
Giegerich R
Methods Mol Biol; 2014; 1097():85-106. PubMed ID: 24639156
[TBL] [Abstract][Full Text] [Related]
7. RNA secondary structure prediction using stochastic context-free grammars and evolutionary history.
Knudsen B; Hein J
Bioinformatics; 1999 Jun; 15(6):446-54. PubMed ID: 10383470
[TBL] [Abstract][Full Text] [Related]
8. Stochastic modeling of RNA pseudoknotted structures: a grammatical approach.
Cai L; Malmberg RL; Wu Y
Bioinformatics; 2003; 19 Suppl 1():i66-73. PubMed ID: 12855439
[TBL] [Abstract][Full Text] [Related]
9. Characterising RNA secondary structure space using information entropy.
Sükösd Z; Knudsen B; Anderson JW; Novák A; Kjems J; Pedersen CN
BMC Bioinformatics; 2013; 14 Suppl 2(Suppl 2):S22. PubMed ID: 23368905
[TBL] [Abstract][Full Text] [Related]
10. Pfold: RNA secondary structure prediction using stochastic context-free grammars.
Knudsen B; Hein J
Nucleic Acids Res; 2003 Jul; 31(13):3423-8. PubMed ID: 12824339
[TBL] [Abstract][Full Text] [Related]
11. Multithreaded comparative RNA secondary structure prediction using stochastic context-free grammars.
Sükösd Z; Knudsen B; Vaerum M; Kjems J; Andersen ES
BMC Bioinformatics; 2011 Apr; 12():103. PubMed ID: 21501497
[TBL] [Abstract][Full Text] [Related]
12. Evaluating the effect of disturbed ensemble distributions on SCFG based statistical sampling of RNA secondary structures.
Scheid A; Nebel ME
BMC Bioinformatics; 2012 Jul; 13():159. PubMed ID: 22776037
[TBL] [Abstract][Full Text] [Related]
13. A semi-supervised learning approach for RNA secondary structure prediction.
Yonemoto H; Asai K; Hamada M
Comput Biol Chem; 2015 Aug; 57():72-9. PubMed ID: 25748534
[TBL] [Abstract][Full Text] [Related]
14. Accelerated probabilistic inference of RNA structure evolution.
Holmes I
BMC Bioinformatics; 2005 Mar; 6():73. PubMed ID: 15790387
[TBL] [Abstract][Full Text] [Related]
15. Computational analysis of RNAs.
Eddy SR
Cold Spring Harb Symp Quant Biol; 2006; 71():117-28. PubMed ID: 17381287
[TBL] [Abstract][Full Text] [Related]
16. A range of complex probabilistic models for RNA secondary structure prediction that includes the nearest-neighbor model and more.
Rivas E; Lang R; Eddy SR
RNA; 2012 Feb; 18(2):193-212. PubMed ID: 22194308
[TBL] [Abstract][Full Text] [Related]
17. Pairwise RNA structure comparison with stochastic context-free grammars.
Holmes I; Rubin GM
Pac Symp Biocomput; 2002; ():163-74. PubMed ID: 11928472
[TBL] [Abstract][Full Text] [Related]
18. Memory efficient alignment between RNA sequences and stochastic grammar models of pseudoknots.
Song Y; Liu C; Malmberg RL; He C; Cai L
Int J Bioinform Res Appl; 2006; 2(3):289-304. PubMed ID: 18048167
[TBL] [Abstract][Full Text] [Related]
19. Pair stochastic tree adjoining grammars for aligning and predicting pseudoknot RNA structures.
Matsui H; Sato K; Sakakibara Y
Bioinformatics; 2005 Jun; 21(11):2611-7. PubMed ID: 15784748
[TBL] [Abstract][Full Text] [Related]
20. Analysis of the free energy in a stochastic RNA secondary structure model.
Nebel ME; Scheid A
IEEE/ACM Trans Comput Biol Bioinform; 2011; 8(6):1468-82. PubMed ID: 21116040
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]