These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
114 related articles for article (PubMed ID: 15215387)
21. Stubb: a program for discovery and analysis of cis-regulatory modules. Sinha S; Liang Y; Siggia E Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W555-9. PubMed ID: 16845069 [TBL] [Abstract][Full Text] [Related]
22. MOTIFSIM: A web tool for detecting similarity in multiple DNA motif datasets. Tran NT; Huang CH Biotechniques; 2015 Jul; 59(1):26-33. PubMed ID: 26156781 [TBL] [Abstract][Full Text] [Related]
23. MSCAN: identification of functional clusters of transcription factor binding sites. Alkema WB; Johansson O; Lagergren J; Wasserman WW Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W195-8. PubMed ID: 15215379 [TBL] [Abstract][Full Text] [Related]
24. cis-regulatory region analysis using BEARR. Vega VB Methods Mol Biol; 2006; 338():119-27. PubMed ID: 16888354 [TBL] [Abstract][Full Text] [Related]
25. An algorithm for finding protein-DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments. Liu XS; Brutlag DL; Liu JS Nat Biotechnol; 2002 Aug; 20(8):835-9. PubMed ID: 12101404 [TBL] [Abstract][Full Text] [Related]
26. Identification of conserved structural features at sequentially degenerate locations in transcription factor binding sites. Burden HE; Weng Z Genome Inform; 2005; 16(1):49-58. PubMed ID: 16362906 [TBL] [Abstract][Full Text] [Related]
27. MotifCombinator: a web-based tool to search for combinations of cis-regulatory motifs. Kato M; Tsunoda T BMC Bioinformatics; 2007 Mar; 8():100. PubMed ID: 17378935 [TBL] [Abstract][Full Text] [Related]
28. De novo prediction of cis-regulatory elements and modules through integrative analysis of a large number of ChIP datasets. Niu M; Tabari ES; Su Z BMC Genomics; 2014 Dec; 15():1047. PubMed ID: 25442502 [TBL] [Abstract][Full Text] [Related]
29. Computer-assisted identification of cell cycle-related genes: new targets for E2F transcription factors. Kel AE; Kel-Margoulis OV; Farnham PJ; Bartley SM; Wingender E; Zhang MQ J Mol Biol; 2001 May; 309(1):99-120. PubMed ID: 11491305 [TBL] [Abstract][Full Text] [Related]
30. DMINDA: an integrated web server for DNA motif identification and analyses. Ma Q; Zhang H; Mao X; Zhou C; Liu B; Chen X; Xu Y Nucleic Acids Res; 2014 Jul; 42(Web Server issue):W12-9. PubMed ID: 24753419 [TBL] [Abstract][Full Text] [Related]
31. TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes. Matys V; Kel-Margoulis OV; Fricke E; Liebich I; Land S; Barre-Dirrie A; Reuter I; Chekmenev D; Krull M; Hornischer K; Voss N; Stegmaier P; Lewicki-Potapov B; Saxel H; Kel AE; Wingender E Nucleic Acids Res; 2006 Jan; 34(Database issue):D108-10. PubMed ID: 16381825 [TBL] [Abstract][Full Text] [Related]
32. The Motif Tool Assessment Platform (MTAP) for sequence-based transcription factor binding site prediction tools. Quest D; Ali H Methods Mol Biol; 2010; 674():121-41. PubMed ID: 20827589 [TBL] [Abstract][Full Text] [Related]
33. GeneNotes--a novel information management software for biologists. Hong P; Wong WH BMC Bioinformatics; 2005 Feb; 6():20. PubMed ID: 15686593 [TBL] [Abstract][Full Text] [Related]
34. A discriminative model for identifying spatial cis-regulatory modules. Segal E; Sharan R J Comput Biol; 2005; 12(6):822-34. PubMed ID: 16108719 [TBL] [Abstract][Full Text] [Related]
35. MoD Tools: regulatory motif discovery in nucleotide sequences from co-regulated or homologous genes. Pavesi G; Mereghetti P; Zambelli F; Stefani M; Mauri G; Pesole G Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W566-70. PubMed ID: 16845071 [TBL] [Abstract][Full Text] [Related]
36. ConSite: web-based prediction of regulatory elements using cross-species comparison. Sandelin A; Wasserman WW; Lenhard B Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W249-52. PubMed ID: 15215389 [TBL] [Abstract][Full Text] [Related]
37. TRED: a Transcriptional Regulatory Element Database and a platform for in silico gene regulation studies. Zhao F; Xuan Z; Liu L; Zhang MQ Nucleic Acids Res; 2005 Jan; 33(Database issue):D103-7. PubMed ID: 15608156 [TBL] [Abstract][Full Text] [Related]
38. FOOTER: a web tool for finding mammalian DNA regulatory regions using phylogenetic footprinting. Corcoran DL; Feingold E; Benos PV Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W442-6. PubMed ID: 15980508 [TBL] [Abstract][Full Text] [Related]
39. ArrayQuest: a web resource for the analysis of DNA microarray data. Argraves GL; Jani S; Barth JL; Argraves WS BMC Bioinformatics; 2005 Dec; 6():287. PubMed ID: 16321157 [TBL] [Abstract][Full Text] [Related]