182 related articles for article (PubMed ID: 15215402)
1. PredictRegulon: a web server for the prediction of the regulatory protein binding sites and operons in prokaryote genomes.
Yellaboina S; Seshadri J; Kumar MS; Ranjan A
Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W318-20. PubMed ID: 15215402
[TBL] [Abstract][Full Text] [Related]
2. iCR: a web tool to identify conserved targets of a regulatory protein across the multiple related prokaryotic species.
Ranjan S; Seshadri J; Vindal V; Yellaboina S; Ranjan A
Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W584-7. PubMed ID: 16845075
[TBL] [Abstract][Full Text] [Related]
3. [Computer analysis of regulatory signals in bacterial genomes. Fnr binding segments].
Gerasimova AV; Rodionov DA; Mironov AA; Gel'fand MS
Mol Biol (Mosk); 2001; 35(6):1001-9. PubMed ID: 11771123
[TBL] [Abstract][Full Text] [Related]
4. CREME: Cis-Regulatory Module Explorer for the human genome.
Sharan R; Ben-Hur A; Loots GG; Ovcharenko I
Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W253-6. PubMed ID: 15215390
[TBL] [Abstract][Full Text] [Related]
5. ConSite: web-based prediction of regulatory elements using cross-species comparison.
Sandelin A; Wasserman WW; Lenhard B
Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W249-52. PubMed ID: 15215389
[TBL] [Abstract][Full Text] [Related]
6. Prediction of DtxR regulon: identification of binding sites and operons controlled by Diphtheria toxin repressor in Corynebacterium diphtheriae.
Yellaboina S; Ranjan S; Chakhaiyar P; Hasnain SE; Ranjan A
BMC Microbiol; 2004 Sep; 4():38. PubMed ID: 15447793
[TBL] [Abstract][Full Text] [Related]
7. SwissRegulon: a database of genome-wide annotations of regulatory sites.
Pachkov M; Erb I; Molina N; van Nimwegen E
Nucleic Acids Res; 2007 Jan; 35(Database issue):D127-31. PubMed ID: 17130146
[TBL] [Abstract][Full Text] [Related]
8. GRASP-DNA: a web application to screen prokaryotic genomes for specific DNA-binding sites and repeat motifs.
Schilling CH; Held L; Torre M; Saier MH
J Mol Microbiol Biotechnol; 2000 Oct; 2(4):495-500. PubMed ID: 11075923
[TBL] [Abstract][Full Text] [Related]
9. BPhyOG: an interactive server for genome-wide inference of bacterial phylogenies based on overlapping genes.
Luo Y; Fu C; Zhang DY; Lin K
BMC Bioinformatics; 2007 Jul; 8():266. PubMed ID: 17650344
[TBL] [Abstract][Full Text] [Related]
10. Genome-wide similarity search for transcription factors and their binding sites in a metal-reducing prokaryote Geobacter sulfurreducens.
Yan B; Lovley DR; Krushkal J
Biosystems; 2007; 90(2):421-41. PubMed ID: 17184904
[TBL] [Abstract][Full Text] [Related]
11. ECR Browser: a tool for visualizing and accessing data from comparisons of multiple vertebrate genomes.
Ovcharenko I; Nobrega MA; Loots GG; Stubbs L
Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W280-6. PubMed ID: 15215395
[TBL] [Abstract][Full Text] [Related]
12. MoD Tools: regulatory motif discovery in nucleotide sequences from co-regulated or homologous genes.
Pavesi G; Mereghetti P; Zambelli F; Stefani M; Mauri G; Pesole G
Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W566-70. PubMed ID: 16845071
[TBL] [Abstract][Full Text] [Related]
13. ClusterDraw web server: a tool to identify and visualize clusters of binding motifs for transcription factors.
Papatsenko D
Bioinformatics; 2007 Apr; 23(8):1032-4. PubMed ID: 17308342
[TBL] [Abstract][Full Text] [Related]
14. SITECON: a tool for detecting conservative conformational and physicochemical properties in transcription factor binding site alignments and for site recognition.
Oshchepkov DY; Vityaev EE; Grigorovich DA; Ignatieva EV; Khlebodarova TM
Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W208-12. PubMed ID: 15215382
[TBL] [Abstract][Full Text] [Related]
15. PREDetector: a new tool to identify regulatory elements in bacterial genomes.
Hiard S; Marée R; Colson S; Hoskisson PA; Titgemeyer F; van Wezel GP; Joris B; Wehenkel L; Rigali S
Biochem Biophys Res Commun; 2007 Jun; 357(4):861-4. PubMed ID: 17451648
[TBL] [Abstract][Full Text] [Related]
16. Dcode.org anthology of comparative genomic tools.
Loots GG; Ovcharenko I
Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W56-64. PubMed ID: 15980535
[TBL] [Abstract][Full Text] [Related]
17. RegTransBase--a database of regulatory sequences and interactions in a wide range of prokaryotic genomes.
Kazakov AE; Cipriano MJ; Novichkov PS; Minovitsky S; Vinogradov DV; Arkin A; Mironov AA; Gelfand MS; Dubchak I
Nucleic Acids Res; 2007 Jan; 35(Database issue):D407-12. PubMed ID: 17142223
[TBL] [Abstract][Full Text] [Related]
18. Identification of operator sites within the upstream region of the putative mce2R gene from mycobacteria.
Vindal V; Ashwantha Kumar E; Ranjan A
FEBS Lett; 2008 Apr; 582(7):1117-22. PubMed ID: 18329386
[TBL] [Abstract][Full Text] [Related]
19. DOOR: a database for prokaryotic operons.
Mao F; Dam P; Chou J; Olman V; Xu Y
Nucleic Acids Res; 2009 Jan; 37(Database issue):D459-63. PubMed ID: 18988623
[TBL] [Abstract][Full Text] [Related]
20. rVISTA 2.0: evolutionary analysis of transcription factor binding sites.
Loots GG; Ovcharenko I
Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W217-21. PubMed ID: 15215384
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]