BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

201 related articles for article (PubMed ID: 15215407)

  • 1. ProSight PTM: an integrated environment for protein identification and characterization by top-down mass spectrometry.
    LeDuc RD; Taylor GK; Kim YB; Januszyk TE; Bynum LH; Sola JV; Garavelli JS; Kelleher NL
    Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W340-5. PubMed ID: 15215407
    [TBL] [Abstract][Full Text] [Related]  

  • 2. ProSight PTM 2.0: improved protein identification and characterization for top down mass spectrometry.
    Zamdborg L; LeDuc RD; Glowacz KJ; Kim YB; Viswanathan V; Spaulding IT; Early BP; Bluhm EJ; Babai S; Kelleher NL
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W701-6. PubMed ID: 17586823
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Web and database software for identification of intact proteins using "top down" mass spectrometry.
    Taylor GK; Kim YB; Forbes AJ; Meng F; McCarthy R; Kelleher NL
    Anal Chem; 2003 Aug; 75(16):4081-6. PubMed ID: 14632120
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Bioinformatics Analysis of Top-Down Mass Spectrometry Data with ProSight Lite.
    DeHart CJ; Fellers RT; Fornelli L; Kelleher NL; Thomas PM
    Methods Mol Biol; 2017; 1558():381-394. PubMed ID: 28150248
    [TBL] [Abstract][Full Text] [Related]  

  • 5. ProSight Lite: graphical software to analyze top-down mass spectrometry data.
    Fellers RT; Greer JB; Early BP; Yu X; LeDuc RD; Kelleher NL; Thomas PM
    Proteomics; 2015 Apr; 15(7):1235-8. PubMed ID: 25828799
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Using ProSight PTM and related tools for targeted protein identification and characterization with high mass accuracy tandem MS data.
    Leduc RD; Kelleher NL
    Curr Protoc Bioinformatics; 2007 Sep; Chapter 13():Unit 13.6. PubMed ID: 18428787
    [TBL] [Abstract][Full Text] [Related]  

  • 7. PTMSearchPlus: software tool for automated protein identification and post-translational modification characterization by integrating accurate intact protein mass and bottom-up mass spectrometric data searches.
    Kertesz V; Connelly HM; Erickson BK; Hettich RL
    Anal Chem; 2009 Oct; 81(20):8387-95. PubMed ID: 19775152
    [TBL] [Abstract][Full Text] [Related]  

  • 8. MODi: a powerful and convenient web server for identifying multiple post-translational peptide modifications from tandem mass spectra.
    Kim S; Na S; Sim JW; Park H; Jeong J; Kim H; Seo Y; Seo J; Lee KJ; Paek E
    Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W258-63. PubMed ID: 16845006
    [TBL] [Abstract][Full Text] [Related]  

  • 9. VEMS 3.0: algorithms and computational tools for tandem mass spectrometry based identification of post-translational modifications in proteins.
    Matthiesen R; Trelle MB; Højrup P; Bunkenborg J; Jensen ON
    J Proteome Res; 2005; 4(6):2338-47. PubMed ID: 16335983
    [TBL] [Abstract][Full Text] [Related]  

  • 10. AutoMotif server: prediction of single residue post-translational modifications in proteins.
    Plewczynski D; Tkacz A; Wyrwicz LS; Rychlewski L
    Bioinformatics; 2005 May; 21(10):2525-7. PubMed ID: 15728119
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Precise and parallel characterization of coding polymorphisms, alternative splicing, and modifications in human proteins by mass spectrometry.
    Roth MJ; Forbes AJ; Boyne MT; Kim YB; Robinson DE; Kelleher NL
    Mol Cell Proteomics; 2005 Jul; 4(7):1002-8. PubMed ID: 15863400
    [TBL] [Abstract][Full Text] [Related]  

  • 12. dbPTM: an information repository of protein post-translational modification.
    Lee TY; Huang HD; Hung JH; Huang HY; Yang YS; Wang TH
    Nucleic Acids Res; 2006 Jan; 34(Database issue):D622-7. PubMed ID: 16381945
    [TBL] [Abstract][Full Text] [Related]  

  • 13. ProSight Native: Defining Protein Complex Composition from Native Top-Down Mass Spectrometry Data.
    Durbin KR; Robey MT; Voong LN; Fellers RT; Lutomski CA; El-Baba TJ; Robinson CV; Kelleher NL
    J Proteome Res; 2023 Aug; 22(8):2660-2668. PubMed ID: 37436406
    [TBL] [Abstract][Full Text] [Related]  

  • 14. New and automated MSn approaches for top-down identification of modified proteins.
    Zabrouskov V; Senko MW; Du Y; Leduc RD; Kelleher NL
    J Am Soc Mass Spectrom; 2005 Dec; 16(12):2027-38. PubMed ID: 16253516
    [TBL] [Abstract][Full Text] [Related]  

  • 15. PRIDE: a public repository of protein and peptide identifications for the proteomics community.
    Jones P; Côté RG; Martens L; Quinn AF; Taylor CF; Derache W; Hermjakob H; Apweiler R
    Nucleic Acids Res; 2006 Jan; 34(Database issue):D659-63. PubMed ID: 16381953
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Web-Based Computational Tools for the Prediction and Analysis of Posttranslational Modifications of Proteins.
    Ivanisenko VA; Ivanisenko TV; Saik OV; Demenkov PS; Afonnikov DA; Kolchanov NA
    Methods Mol Biol; 2019; 1934():1-20. PubMed ID: 31256369
    [TBL] [Abstract][Full Text] [Related]  

  • 17. SysPTM: a systematic resource for proteomic research on post-translational modifications.
    Li H; Xing X; Ding G; Li Q; Wang C; Xie L; Zeng R; Li Y
    Mol Cell Proteomics; 2009 Aug; 8(8):1839-49. PubMed ID: 19366988
    [TBL] [Abstract][Full Text] [Related]  

  • 18. The neXtProt knowledgebase in 2020: data, tools and usability improvements.
    Zahn-Zabal M; Michel PA; Gateau A; Nikitin F; Schaeffer M; Audot E; Gaudet P; Duek PD; Teixeira D; Rech de Laval V; Samarasinghe K; Bairoch A; Lane L
    Nucleic Acids Res; 2020 Jan; 48(D1):D328-D334. PubMed ID: 31724716
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Prediction of posttranslational modifications using intact-protein mass spectrometric data.
    Holmes MR; Giddings MC
    Anal Chem; 2004 Jan; 76(2):276-82. PubMed ID: 14719871
    [TBL] [Abstract][Full Text] [Related]  

  • 20. PIA: An Intuitive Protein Inference Engine with a Web-Based User Interface.
    Uszkoreit J; Maerkens A; Perez-Riverol Y; Meyer HE; Marcus K; Stephan C; Kohlbacher O; Eisenacher M
    J Proteome Res; 2015 Jul; 14(7):2988-97. PubMed ID: 25938255
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.