These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
2. Intramolecular surface contacts contain information about protein-protein interface regions. de Vries SJ; Bonvin AM Bioinformatics; 2006 Sep; 22(17):2094-8. PubMed ID: 16766554 [TBL] [Abstract][Full Text] [Related]
3. Predicting disulfide connectivity from protein sequence using multiple sequence feature vectors and secondary structure. Song J; Yuan Z; Tan H; Huber T; Burrage K Bioinformatics; 2007 Dec; 23(23):3147-54. PubMed ID: 17942444 [TBL] [Abstract][Full Text] [Related]
4. Prediction of Ras-effector interactions using position energy matrices. Kiel C; Serrano L Bioinformatics; 2007 Sep; 23(17):2226-30. PubMed ID: 17599936 [TBL] [Abstract][Full Text] [Related]
5. Q-SiteFinder: an energy-based method for the prediction of protein-ligand binding sites. Laurie AT; Jackson RM Bioinformatics; 2005 May; 21(9):1908-16. PubMed ID: 15701681 [TBL] [Abstract][Full Text] [Related]
6. Partial correlation coefficient between distance matrices as a new indicator of protein-protein interactions. Sato T; Yamanishi Y; Horimoto K; Kanehisa M; Toh H Bioinformatics; 2006 Oct; 22(20):2488-92. PubMed ID: 16882650 [TBL] [Abstract][Full Text] [Related]
7. Detection of 3D atomic similarities and their use in the discrimination of small molecule protein-binding sites. Najmanovich R; Kurbatova N; Thornton J Bioinformatics; 2008 Aug; 24(16):i105-11. PubMed ID: 18689810 [TBL] [Abstract][Full Text] [Related]
8. Rapid knot detection and application to protein structure prediction. Khatib F; Weirauch MT; Rohl CA Bioinformatics; 2006 Jul; 22(14):e252-9. PubMed ID: 16873480 [TBL] [Abstract][Full Text] [Related]
9. Cysteine separations profiles on protein sequences infer disulfide connectivity. Zhao E; Liu HL; Tsai CH; Tsai HK; Chan CH; Kao CY Bioinformatics; 2005 Apr; 21(8):1415-20. PubMed ID: 15585533 [TBL] [Abstract][Full Text] [Related]
10. Prediction of protein-protein interactions by combining structure and sequence conservation in protein interfaces. Aytuna AS; Gursoy A; Keskin O Bioinformatics; 2005 Jun; 21(12):2850-5. PubMed ID: 15855251 [TBL] [Abstract][Full Text] [Related]
11. Modeling protein loops with knowledge-based prediction of sequence-structure alignment. Peng HP; Yang AS Bioinformatics; 2007 Nov; 23(21):2836-42. PubMed ID: 17827204 [TBL] [Abstract][Full Text] [Related]
12. PIBASE: a comprehensive database of structurally defined protein interfaces. Davis FP; Sali A Bioinformatics; 2005 May; 21(9):1901-7. PubMed ID: 15657096 [TBL] [Abstract][Full Text] [Related]
13. Support vector machines for prediction of dihedral angle regions. Zimmermann O; Hansmann UH Bioinformatics; 2006 Dec; 22(24):3009-15. PubMed ID: 17005536 [TBL] [Abstract][Full Text] [Related]
14. Generation of 3D templates of active sites of proteins with rigid prosthetic groups. Nebel JC Bioinformatics; 2006 May; 22(10):1183-9. PubMed ID: 16473871 [TBL] [Abstract][Full Text] [Related]
15. PFRES: protein fold classification by using evolutionary information and predicted secondary structure. Chen K; Kurgan L Bioinformatics; 2007 Nov; 23(21):2843-50. PubMed ID: 17942446 [TBL] [Abstract][Full Text] [Related]
16. Prediction of zinc-binding sites in proteins from sequence. Shu N; Zhou T; Hovmöller S Bioinformatics; 2008 Mar; 24(6):775-82. PubMed ID: 18245129 [TBL] [Abstract][Full Text] [Related]
17. A new representation for protein secondary structure prediction based on frequent patterns. Birzele F; Kramer S Bioinformatics; 2006 Nov; 22(21):2628-34. PubMed ID: 16940325 [TBL] [Abstract][Full Text] [Related]