BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

118 related articles for article (PubMed ID: 15264257)

  • 1. Optimization and dynamics of protein-protein complexes using B-splines.
    Gillilan RE; Lilien RH
    J Comput Chem; 2004 Oct; 25(13):1630-46. PubMed ID: 15264257
    [TBL] [Abstract][Full Text] [Related]  

  • 2. An efficient molecular docking using conformational space annealing.
    Lee K; Czaplewski C; Kim SY; Lee J
    J Comput Chem; 2005 Jan; 26(1):78-87. PubMed ID: 15538770
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Detailed analysis of grid-based molecular docking: A case study of CDOCKER-A CHARMm-based MD docking algorithm.
    Wu G; Robertson DH; Brooks CL; Vieth M
    J Comput Chem; 2003 Oct; 24(13):1549-62. PubMed ID: 12925999
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Progress in protein-protein docking: atomic resolution predictions in the CAPRI experiment using RosettaDock with an improved treatment of side-chain flexibility.
    Schueler-Furman O; Wang C; Baker D
    Proteins; 2005 Aug; 60(2):187-94. PubMed ID: 15981249
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Performance of hybrid methods for large-scale unconstrained optimization as applied to models of proteins.
    Das B; Meirovitch H; Navon IM
    J Comput Chem; 2003 Jul; 24(10):1222-31. PubMed ID: 12820130
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Physicochemical and residue conservation calculations to improve the ranking of protein-protein docking solutions.
    Duan Y; Reddy BV; Kaznessis YN
    Protein Sci; 2005 Feb; 14(2):316-28. PubMed ID: 15659366
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Incorporating receptor flexibility in the molecular design of protein interfaces.
    Li L; Liang S; Pilcher MM; Meroueh SO
    Protein Eng Des Sel; 2009 Sep; 22(9):575-86. PubMed ID: 19643976
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Study of protein-protein interaction using conformational space annealing.
    Lee K; Sim J; Lee J
    Proteins; 2005 Aug; 60(2):257-62. PubMed ID: 15981254
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Inherent speedup limitations in multiple time step/particle mesh Ewald algorithms.
    Barash D; Yang L; Qian X; Schlick T
    J Comput Chem; 2003 Jan; 24(1):77-88. PubMed ID: 12483677
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Energy minimization in low-frequency normal modes to efficiently allow for global flexibility during systematic protein-protein docking.
    May A; Zacharias M
    Proteins; 2008 Feb; 70(3):794-809. PubMed ID: 17729269
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Simulated annealing coupled replica exchange molecular dynamics--an efficient conformational sampling method.
    Kannan S; Zacharias M
    J Struct Biol; 2009 Jun; 166(3):288-94. PubMed ID: 19272454
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Development and testing of an automated approach to protein docking.
    Tovchigrechko A; Vakser IA
    Proteins; 2005 Aug; 60(2):296-301. PubMed ID: 15981259
    [TBL] [Abstract][Full Text] [Related]  

  • 13. The generalized molecular fractionation with conjugate caps/molecular mechanics method for direct calculation of protein energy.
    He X; Zhang JZ
    J Chem Phys; 2006 May; 124(18):184703. PubMed ID: 16709127
    [TBL] [Abstract][Full Text] [Related]  

  • 14. The impact of protein flexibility on protein-protein docking.
    Ehrlich LP; Nilges M; Wade RC
    Proteins; 2005 Jan; 58(1):126-33. PubMed ID: 15515181
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Molecular dynamics simulations.
    Lindahl ER
    Methods Mol Biol; 2008; 443():3-23. PubMed ID: 18446279
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Flexible relaxation of rigid-body docking solutions.
    Król M; Tournier AL; Bates PA
    Proteins; 2007 Jul; 68(1):159-69. PubMed ID: 17397060
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Implementation of a symplectic multiple-time-step molecular dynamics algorithm, based on the united-residue mesoscopic potential energy function.
    Rakowski F; Grochowski P; Lesyng B; Liwo A; Scheraga HA
    J Chem Phys; 2006 Nov; 125(20):204107. PubMed ID: 17144690
    [TBL] [Abstract][Full Text] [Related]  

  • 18. ROSETTALIGAND: protein-small molecule docking with full side-chain flexibility.
    Meiler J; Baker D
    Proteins; 2006 Nov; 65(3):538-48. PubMed ID: 16972285
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Energy minimizations with a combination of two knowledge-based potentials for protein folding.
    de Sancho D; Rey A
    J Comput Chem; 2008 Jul; 29(10):1684-92. PubMed ID: 18351603
    [TBL] [Abstract][Full Text] [Related]  

  • 20. A knowledge-based energy function for protein-ligand, protein-protein, and protein-DNA complexes.
    Zhang C; Liu S; Zhu Q; Zhou Y
    J Med Chem; 2005 Apr; 48(7):2325-35. PubMed ID: 15801826
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.