BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

218 related articles for article (PubMed ID: 15269249)

  • 1. Informatics platform for global proteomic profiling and biomarker discovery using liquid chromatography-tandem mass spectrometry.
    Radulovic D; Jelveh S; Ryu S; Hamilton TG; Foss E; Mao Y; Emili A
    Mol Cell Proteomics; 2004 Oct; 3(10):984-97. PubMed ID: 15269249
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Corra: Computational framework and tools for LC-MS discovery and targeted mass spectrometry-based proteomics.
    Brusniak MY; Bodenmiller B; Campbell D; Cooke K; Eddes J; Garbutt A; Lau H; Letarte S; Mueller LN; Sharma V; Vitek O; Zhang N; Aebersold R; Watts JD
    BMC Bioinformatics; 2008 Dec; 9():542. PubMed ID: 19087345
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Evaluation of strong cation exchange versus isoelectric focusing of peptides for multidimensional liquid chromatography-tandem mass spectrometry.
    Slebos RJ; Brock JW; Winters NF; Stuart SR; Martinez MA; Li M; Chambers MC; Zimmerman LJ; Ham AJ; Tabb DL; Liebler DC
    J Proteome Res; 2008 Dec; 7(12):5286-94. PubMed ID: 18939861
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Aligning LC peaks by converting gradient retention times to retention index of peptides in proteomic experiments.
    Shinoda K; Tomita M; Ishihama Y
    Bioinformatics; 2008 Jul; 24(14):1590-5. PubMed ID: 18492686
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Statistical and computational methods for comparative proteomic profiling using liquid chromatography-tandem mass spectrometry.
    Listgarten J; Emili A
    Mol Cell Proteomics; 2005 Apr; 4(4):419-34. PubMed ID: 15741312
    [TBL] [Abstract][Full Text] [Related]  

  • 6. A simple peak detection and label-free quantitation algorithm for chromatography-mass spectrometry.
    Aoshima K; Takahashi K; Ikawa M; Kimura T; Fukuda M; Tanaka S; Parry HE; Fujita Y; Yoshizawa AC; Utsunomiya S; Kajihara S; Tanaka K; Oda Y
    BMC Bioinformatics; 2014 Nov; 15(1):376. PubMed ID: 25420746
    [TBL] [Abstract][Full Text] [Related]  

  • 7. MS-BID: a Java package for label-free LC-MS-based comparative proteomic analysis.
    Hwang D; Zhang N; Lee H; Yi E; Zhang H; Lee IY; Hood L; Aebersold R
    Bioinformatics; 2008 Nov; 24(22):2641-2. PubMed ID: 18805798
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Global quantitative proteomic profiling through 18O-labeling in combination with MS/MS spectra analysis.
    White CA; Oey N; Emili A
    J Proteome Res; 2009 Jul; 8(7):3653-65. PubMed ID: 19400582
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Synthetic peptide arrays for pathway-level protein monitoring by liquid chromatography-tandem mass spectrometry.
    Hewel JA; Liu J; Onishi K; Fong V; Chandran S; Olsen JB; Pogoutse O; Schutkowski M; Wenschuh H; Winkler DF; Eckler L; Zandstra PW; Emili A
    Mol Cell Proteomics; 2010 Nov; 9(11):2460-73. PubMed ID: 20467045
    [TBL] [Abstract][Full Text] [Related]  

  • 10. A bioinformatics approach for biomarker identification in radiation-induced lung inflammation from limited proteomics data.
    Oh JH; Craft JM; Townsend R; Deasy JO; Bradley JD; El Naqa I
    J Proteome Res; 2011 Mar; 10(3):1406-15. PubMed ID: 21226504
    [TBL] [Abstract][Full Text] [Related]  

  • 11. MassUntangler: a novel alignment tool for label-free liquid chromatography-mass spectrometry proteomic data.
    Ballardini R; Benevento M; Arrigoni G; Pattini L; Roda A
    J Chromatogr A; 2011 Dec; 1218(49):8859-68. PubMed ID: 21783198
    [TBL] [Abstract][Full Text] [Related]  

  • 12. APP: an Automated Proteomics Pipeline for the analysis of mass spectrometry data based on multiple open access tools.
    Malm EK; Srivastava V; Sundqvist G; Bulone V
    BMC Bioinformatics; 2014 Dec; 15(1):441. PubMed ID: 25547515
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Informatics for peptide retention properties in proteomic LC-MS.
    Shinoda K; Sugimoto M; Tomita M; Ishihama Y
    Proteomics; 2008 Feb; 8(4):787-98. PubMed ID: 18214845
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Clinical proteomics: liquid chromatography-mass spectrometry purification systems.
    Henry M; Meleady P
    Methods Mol Biol; 2011; 681():473-83. PubMed ID: 20978984
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Multidimensional protein identification technology: current status and future prospects.
    Kislinger T; Emili A
    Expert Rev Proteomics; 2005 Jan; 2(1):27-39. PubMed ID: 15966850
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Improving mass and liquid chromatography based identification of proteins using bayesian scoring.
    Chen SS; Deutsch EW; Yi EC; Li XJ; Goodlett DR; Aebersold R
    J Proteome Res; 2005; 4(6):2174-84. PubMed ID: 16335964
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Quantifying reproducibility for differential proteomics: noise analysis for protein liquid chromatography-mass spectrometry of human serum.
    Anderle M; Roy S; Lin H; Becker C; Joho K
    Bioinformatics; 2004 Dec; 20(18):3575-82. PubMed ID: 15284095
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Microcapillary liquid chromatography/tandem mass spectrometry using alkaline pH mobile phases and positive ion detection.
    Tomlinson AJ; Chicz RM
    Rapid Commun Mass Spectrom; 2003; 17(9):909-16. PubMed ID: 12717763
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Large-scale quantitative clinical proteomics by label-free liquid chromatography and mass spectrometry.
    Negishi A; Ono M; Handa Y; Kato H; Yamashita K; Honda K; Shitashige M; Satow R; Sakuma T; Kuwabara H; Omura K; Hirohashi S; Yamada T
    Cancer Sci; 2009 Mar; 100(3):514-9. PubMed ID: 19154406
    [TBL] [Abstract][Full Text] [Related]  

  • 20. A suite of algorithms for the comprehensive analysis of complex protein mixtures using high-resolution LC-MS.
    Bellew M; Coram M; Fitzgibbon M; Igra M; Randolph T; Wang P; May D; Eng J; Fang R; Lin C; Chen J; Goodlett D; Whiteaker J; Paulovich A; McIntosh M
    Bioinformatics; 2006 Aug; 22(15):1902-9. PubMed ID: 16766559
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.