BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

198 related articles for article (PubMed ID: 15285893)

  • 1. A polynomial-time nuclear vector replacement algorithm for automated NMR resonance assignments.
    Langmead CJ; Yan A; Lilien R; Wang L; Donald BR
    J Comput Biol; 2004; 11(2-3):277-98. PubMed ID: 15285893
    [TBL] [Abstract][Full Text] [Related]  

  • 2. An expectation/maximization nuclear vector replacement algorithm for automated NMR resonance assignments.
    Langmead CJ; Donald BR
    J Biomol NMR; 2004 Jun; 29(2):111-38. PubMed ID: 15014227
    [TBL] [Abstract][Full Text] [Related]  

  • 3. A Hausdorff-based NOE assignment algorithm using protein backbone determined from residual dipolar couplings and rotamer patterns.
    Zeng J; Tripathy C; Zhou P; Donald BR
    Comput Syst Bioinformatics Conf; 2008; 7():169-81. PubMed ID: 19642278
    [TBL] [Abstract][Full Text] [Related]  

  • 4. NVR-BIP: Nuclear Vector Replacement using Binary Integer Programming for NMR Structure-Based Assignments.
    Apaydin MS; Çatay B; Patrick N; Donald BR
    Comput J; 2011 May; 54(5):708-716. PubMed ID: 25580019
    [TBL] [Abstract][Full Text] [Related]  

  • 5. 3D structural homology detection via unassigned residual dipolar couplings.
    Langmead CJ; Donald BR
    Proc IEEE Comput Soc Bioinform Conf; 2003; 2():209-17. PubMed ID: 16452795
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Structure-based protein NMR assignments using native structural ensembles.
    Apaydin MS; Conitzer V; Donald BR
    J Biomol NMR; 2008 Apr; 40(4):263-76. PubMed ID: 18365752
    [TBL] [Abstract][Full Text] [Related]  

  • 7. An algebraic geometry approach to protein structure determination from NMR data.
    Wang L; Mettu RR; Donald BR
    Proc IEEE Comput Syst Bioinform Conf; 2005; ():235-46. PubMed ID: 16447981
    [TBL] [Abstract][Full Text] [Related]  

  • 8. High-throughput 3D structural homology detection via NMR resonance assignment.
    Langmead CJ; Donald BR
    Proc IEEE Comput Syst Bioinform Conf; 2004; ():278-89. PubMed ID: 16448021
    [TBL] [Abstract][Full Text] [Related]  

  • 9. An efficient and accurate algorithm for assigning nuclear overhauser effect restraints using a rotamer library ensemble and residual dipolar couplings.
    Wang L; Donald BR
    Proc IEEE Comput Syst Bioinform Conf; 2005; ():189-202. PubMed ID: 16447976
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Automating unambiguous NOE data usage in NVR for NMR protein structure-based assignments.
    Akhmedov M; Çatay B; Apaydın MS
    J Bioinform Comput Biol; 2015 Dec; 13(6):1550020. PubMed ID: 26260854
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Automated amino acid side-chain NMR assignment of proteins using (13)C- and (15)N-resolved 3D [ (1)H, (1)H]-NOESY.
    Fiorito F; Herrmann T; Damberger FF; Wüthrich K
    J Biomol NMR; 2008 Sep; 42(1):23-33. PubMed ID: 18709333
    [TBL] [Abstract][Full Text] [Related]  

  • 12. The NOESY jigsaw: automated protein secondary structure and main-chain assignment from sparse, unassigned NMR data.
    Bailey-Kellogg C; Widge A; Kelley JJ; Berardi MJ; Bushweller JH; Donald BR
    J Comput Biol; 2000; 7(3-4):537-58. PubMed ID: 11108478
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Protein side-chain resonance assignment and NOE assignment using RDC-defined backbones without TOCSY data.
    Zeng J; Zhou P; Donald BR
    J Biomol NMR; 2011 Aug; 50(4):371-95. PubMed ID: 21706248
    [TBL] [Abstract][Full Text] [Related]  

  • 14. A HAUSDORFF-BASED NOE ASSIGNMENT ALGORITHM USING PROTEIN BACKBONE DETERMINED FROM RESIDUAL DIPOLAR COUPLINGS AND ROTAMER PATTERNS.
    Zeng JM; Tripathy C; Zhou P; Donald BR
    Comput Syst Bioinformatics Conf; 2008; 2008():169-181. PubMed ID: 19122773
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Exact solutions for internuclear vectors and backbone dihedral angles from NH residual dipolar couplings in two media, and their application in a systematic search algorithm for determining protein backbone structure.
    Wang L; Donald BR
    J Biomol NMR; 2004 Jul; 29(3):223-42. PubMed ID: 15213422
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Backbone assignment and secondary structure of Rnd1, an unusual Rho family small GTPase.
    Cao S; Mao X; Liu D; Buck M
    Biomol NMR Assign; 2013 Oct; 7(2):121-8. PubMed ID: 22618864
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Protein-ligand NOE matching: a high-throughput method for binding pose evaluation that does not require protein NMR resonance assignments.
    Constantine KL; Davis ME; Metzler WJ; Mueller L; Claus BL
    J Am Chem Soc; 2006 Jun; 128(22):7252-63. PubMed ID: 16734479
    [TBL] [Abstract][Full Text] [Related]  

  • 18. A new algorithm for reliable and general NMR resonance assignment.
    Schmidt E; Güntert P
    J Am Chem Soc; 2012 Aug; 134(30):12817-29. PubMed ID: 22794163
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Backbone resonance assignment and order tensor estimation using residual dipolar couplings.
    Shealy P; Liu Y; Simin M; Valafar H
    J Biomol NMR; 2011 Aug; 50(4):357-69. PubMed ID: 21667298
    [TBL] [Abstract][Full Text] [Related]  

  • 20. A tabu search approach for the NMR protein structure-based assignment problem.
    Cavuşlar G; Çatay B; Apaydın MS
    IEEE/ACM Trans Comput Biol Bioinform; 2012; 9(6):1621-8. PubMed ID: 23221084
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.