These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

225 related articles for article (PubMed ID: 15288779)

  • 1. Deprotonation stimulates productive folding in allosteric TRAP hammerhead ribozymes.
    Saksmerprome V; Burke DH
    J Mol Biol; 2004 Aug; 341(3):685-94. PubMed ID: 15288779
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Catalytic strategies of self-cleaving ribozymes.
    Cochrane JC; Strobel SA
    Acc Chem Res; 2008 Aug; 41(8):1027-35. PubMed ID: 18652494
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Diffusely bound Mg2+ ions slightly reorient stems I and II of the hammerhead ribozyme to increase the probability of formation of the catalytic core.
    Rueda D; Wick K; McDowell SE; Walter NG
    Biochemistry; 2003 Aug; 42(33):9924-36. PubMed ID: 12924941
    [TBL] [Abstract][Full Text] [Related]  

  • 4. A core folding model for catalysis by the hammerhead ribozyme accounts for its extraordinary sensitivity to abasic mutations.
    Peracchi A; Karpeisky A; Maloney L; Beigelman L; Herschlag D
    Biochemistry; 1998 Oct; 37(42):14765-75. PubMed ID: 9778351
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Structural flexibility and the thermodynamics of helix exchange constrain attenuation and allosteric activation of hammerhead ribozyme TRAPs.
    Saksmerprome V; Burke DH
    Biochemistry; 2003 Dec; 42(47):13879-86. PubMed ID: 14636055
    [TBL] [Abstract][Full Text] [Related]  

  • 6. A pH-dependent conformational change, rather than the chemical step, appears to be rate-limiting in the hammerhead ribozyme cleavage reaction.
    Murray JB; Dunham CM; Scott WG
    J Mol Biol; 2002 Jan; 315(2):121-30. PubMed ID: 11779233
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Productive folding to the native state by a group II intron ribozyme.
    Swisher JF; Su LJ; Brenowitz M; Anderson VE; Pyle AM
    J Mol Biol; 2002 Jan; 315(3):297-310. PubMed ID: 11786013
    [TBL] [Abstract][Full Text] [Related]  

  • 8. A pH-sensitive RNA tertiary interaction affects self-cleavage activity of the HDV ribozymes in the absence of added divalent metal ion.
    Wadkins TS; Shih I; Perrotta AT; Been MD
    J Mol Biol; 2001 Feb; 305(5):1045-55. PubMed ID: 11162113
    [TBL] [Abstract][Full Text] [Related]  

  • 9. The maturase encoded by a group I intron from Aspergillus nidulans stabilizes RNA tertiary structure and promotes rapid splicing.
    Ho Y; Waring RB
    J Mol Biol; 1999 Oct; 292(5):987-1001. PubMed ID: 10512698
    [TBL] [Abstract][Full Text] [Related]  

  • 10. New pathways in folding of the Tetrahymena group I RNA enzyme.
    Russell R; Herschlag D
    J Mol Biol; 1999 Sep; 291(5):1155-67. PubMed ID: 10518951
    [TBL] [Abstract][Full Text] [Related]  

  • 11. The ion-induced folding of the hammerhead ribozyme: core sequence changes that perturb folding into the active conformation.
    Bassi GS; Murchie AI; Lilley DM
    RNA; 1996 Aug; 2(8):756-68. PubMed ID: 8752086
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Efficient improvement of hammerhead ribozyme mediated cleavage of long substrates by oligonucleotide facilitators.
    Jankowsky E; Schwenzer B
    Biochemistry; 1996 Dec; 35(48):15313-21. PubMed ID: 8952482
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Fast folding mutants of the Tetrahymena group I ribozyme reveal a rugged folding energy landscape.
    Rook MS; Treiber DK; Williamson JR
    J Mol Biol; 1998 Aug; 281(4):609-20. PubMed ID: 9710534
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Model for general acid-base catalysis by the hammerhead ribozyme: pH-activity relationships of G8 and G12 variants at the putative active site.
    Han J; Burke JM
    Biochemistry; 2005 May; 44(21):7864-70. PubMed ID: 15910000
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Design of a highly reactive HDV ribozyme sequence uncovers facilitation of RNA folding by alternative pairings and physiological ionic strength.
    Brown TS; Chadalavada DM; Bevilacqua PC
    J Mol Biol; 2004 Aug; 341(3):695-712. PubMed ID: 15288780
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Stopped-flow fluorescence spectroscopy of a group II intron ribozyme reveals that domain 1 is an independent folding unit with a requirement for specific Mg2+ ions in the tertiary structure.
    Qin PZ; Pyle AM
    Biochemistry; 1997 Apr; 36(16):4718-30. PubMed ID: 9125492
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Computational design and experimental validation of oligonucleotide-sensing allosteric ribozymes.
    Penchovsky R; Breaker RR
    Nat Biotechnol; 2005 Nov; 23(11):1424-33. PubMed ID: 16244657
    [TBL] [Abstract][Full Text] [Related]  

  • 18. pH dependencies of the Tetrahymena ribozyme reveal an unconventional origin of an apparent pKa.
    Knitt DS; Herschlag D
    Biochemistry; 1996 Feb; 35(5):1560-70. PubMed ID: 8634287
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Critical nature of a specific uridine O2-carbonyl for cleavage by the hammerhead ribozyme.
    Bevers S; Ha SB; McLaughlin LW
    Biochemistry; 1999 Jun; 38(24):7710-8. PubMed ID: 10387010
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Role of an active site adenine in hairpin ribozyme catalysis.
    Kuzmin YI; Da Costa CP; Cottrell JW; Fedor MJ
    J Mol Biol; 2005 Jun; 349(5):989-1010. PubMed ID: 15907933
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.