165 related articles for article (PubMed ID: 15297981)
1. Ancestral maximum likelihood of evolutionary trees is hard.
Addario-Berry L; Chor B; Hallett M; Lagergren J; Panconesi A; Wareham T
J Bioinform Comput Biol; 2004 Jun; 2(2):257-71. PubMed ID: 15297981
[TBL] [Abstract][Full Text] [Related]
2. Approximate maximum parsimony and ancestral maximum likelihood.
Alon N; Chor B; Pardi F; Rapoport A
IEEE/ACM Trans Comput Biol Bioinform; 2010; 7(1):183-7. PubMed ID: 20150680
[TBL] [Abstract][Full Text] [Related]
3. Ancestral sequence alignment under optimal conditions.
Hudek AK; Brown DG
BMC Bioinformatics; 2005 Nov; 6():273. PubMed ID: 16293191
[TBL] [Abstract][Full Text] [Related]
4. AxML: a fast program for sequential and parallel phylogenetic tree calculations based on the maximum likelihood method.
Stamatakis AP; Ludwig T; Meier H; Wolf MJ
Proc IEEE Comput Soc Bioinform Conf; 2002; 1():21-8. PubMed ID: 15838120
[TBL] [Abstract][Full Text] [Related]
5. Reconstructing ancestral genomic sequences by co-evolution: formal definitions, computational issues, and biological examples.
Tuller T; Birin H; Kupiec M; Ruppin E
J Comput Biol; 2010 Sep; 17(9):1327-44. PubMed ID: 20874411
[TBL] [Abstract][Full Text] [Related]
6. Reconstruction of ancestral genomic sequences using likelihood.
Elias I; Tuller T
J Comput Biol; 2007 Mar; 14(2):216-37. PubMed ID: 17456016
[TBL] [Abstract][Full Text] [Related]
7. Maximum likelihood of evolutionary trees: hardness and approximation.
Chor B; Tuller T
Bioinformatics; 2005 Jun; 21 Suppl 1():i97-106. PubMed ID: 15961504
[TBL] [Abstract][Full Text] [Related]
8. A short proof that phylogenetic tree reconstruction by maximum likelihood is hard.
Roch S
IEEE/ACM Trans Comput Biol Bioinform; 2006; 3(1):92-4. PubMed ID: 17048396
[TBL] [Abstract][Full Text] [Related]
9. Upper bounds on maximum likelihood for phylogenetic trees.
Hendy MD; Holland BR
Bioinformatics; 2003 Oct; 19 Suppl 2():ii66-72. PubMed ID: 14534174
[TBL] [Abstract][Full Text] [Related]
10. Maximum likelihood of phylogenetic networks.
Jin G; Nakhleh L; Snir S; Tuller T
Bioinformatics; 2006 Nov; 22(21):2604-11. PubMed ID: 16928736
[TBL] [Abstract][Full Text] [Related]
11. A topological transformation in evolutionary tree search methods based on maximum likelihood combining p-ECR and neighbor joining.
Guo MZ; Li JF; Liu Y
BMC Bioinformatics; 2008 May; 9 Suppl 6(Suppl 6):S4. PubMed ID: 18541057
[TBL] [Abstract][Full Text] [Related]
12. pIQPNNI: parallel reconstruction of large maximum likelihood phylogenies.
Minh BQ; Vinh le S; von Haeseler A; Schmidt HA
Bioinformatics; 2005 Oct; 21(19):3794-6. PubMed ID: 16046495
[TBL] [Abstract][Full Text] [Related]
13. The tree alignment problem.
Varón A; Wheeler WC
BMC Bioinformatics; 2012 Nov; 13():293. PubMed ID: 23140486
[TBL] [Abstract][Full Text] [Related]
14. Optimal algorithms for local vertex quartet cleaning.
Della Vedova G; Wareham HT
Bioinformatics; 2002 Oct; 18(10):1297-304. PubMed ID: 12376373
[TBL] [Abstract][Full Text] [Related]
15. Performance, accuracy, and Web server for evolutionary placement of short sequence reads under maximum likelihood.
Berger SA; Krompass D; Stamatakis A
Syst Biol; 2011 May; 60(3):291-302. PubMed ID: 21436105
[TBL] [Abstract][Full Text] [Related]
16. Bayesian coestimation of phylogeny and sequence alignment.
Lunter G; Miklós I; Drummond A; Jensen JL; Hein J
BMC Bioinformatics; 2005 Apr; 6():83. PubMed ID: 15804354
[TBL] [Abstract][Full Text] [Related]
17. Representation in stochastic search for phylogenetic tree reconstruction.
Weber G; Ohno-Machado L; Shieber S
J Biomed Inform; 2006 Feb; 39(1):43-50. PubMed ID: 16359929
[TBL] [Abstract][Full Text] [Related]
18. Pandit: a database of protein and associated nucleotide domains with inferred trees.
Whelan S; de Bakker PI; Goldman N
Bioinformatics; 2003 Aug; 19(12):1556-63. PubMed ID: 12912837
[TBL] [Abstract][Full Text] [Related]
19. New approaches to phylogenetic tree search and their application to large numbers of protein alignments.
Whelan S
Syst Biol; 2007 Oct; 56(5):727-40. PubMed ID: 17849327
[TBL] [Abstract][Full Text] [Related]
20. On the quality of tree-based protein classification.
Lazareva-Ulitsky B; Diemer K; Thomas PD
Bioinformatics; 2005 May; 21(9):1876-90. PubMed ID: 15647305
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]