374 related articles for article (PubMed ID: 15312235)
1. IdentiCS--identification of coding sequence and in silico reconstruction of the metabolic network directly from unannotated low-coverage bacterial genome sequence.
Sun J; Zeng AP
BMC Bioinformatics; 2004 Aug; 5():112. PubMed ID: 15312235
[TBL] [Abstract][Full Text] [Related]
2. [Analysis, identification and correction of some errors of model refseqs appeared in NCBI Human Gene Database by in silico cloning and experimental verification of novel human genes].
Zhang DL; Ji L; Li YD
Yi Chuan Xue Bao; 2004 May; 31(5):431-43. PubMed ID: 15478601
[TBL] [Abstract][Full Text] [Related]
3. [Correction of five different types of errors of model REFSEQs appeared in NCBI human gene database only by using two novel human genes C17orf32 and ZNF362].
Zhang DL; Li YD; Ji L
Yi Chuan Xue Bao; 2004 Apr; 31(4):325-34. PubMed ID: 15487498
[TBL] [Abstract][Full Text] [Related]
4. Characterization of 954 bovine full-CDS cDNA sequences.
Harhay GP; Sonstegard TS; Keele JW; Heaton MP; Clawson ML; Snelling WM; Wiedmann RT; Van Tassell CP; Smith TP
BMC Genomics; 2005 Nov; 6():166. PubMed ID: 16305752
[TBL] [Abstract][Full Text] [Related]
5. A database of phylogenetically atypical genes in archaeal and bacterial genomes, identified using the DarkHorse algorithm.
Podell S; Gaasterland T; Allen EE
BMC Bioinformatics; 2008 Oct; 9():419. PubMed ID: 18840280
[TBL] [Abstract][Full Text] [Related]
6. A protein database constructed from low-coverage genomic sequence of Bacillus megaterium and its use for accelerated proteomic analysis.
Sun J; Wang W; Hundertmark C; Zeng AP; Jahn D; Deckwer WD
J Biotechnol; 2006 Jul; 124(3):486-95. PubMed ID: 16567015
[TBL] [Abstract][Full Text] [Related]
7. Identification of polymorphic tandem repeats by direct comparison of genome sequence from different bacterial strains: a web-based resource.
Denoeud F; Vergnaud G
BMC Bioinformatics; 2004 Jan; 5():4. PubMed ID: 14715089
[TBL] [Abstract][Full Text] [Related]
8. An approach to pathway reconstruction using whole genome metabolic models and sensitive sequence searching.
Saqi M; Dobson RJ; Kraben P; Hodgson DA; Wild DL
J Integr Bioinform; 2009 Jul; 6(1):107. PubMed ID: 20134075
[TBL] [Abstract][Full Text] [Related]
9. Genomic peculiarity of coding sequences and metabolic potential of probiotic Escherichia coli strain Nissle 1917 inferred from raw genome data.
Sun J; Gunzer F; Westendorf AM; Buer J; Scharfe M; Jarek M; Gössling F; Blöcker H; Zeng AP
J Biotechnol; 2005 May; 117(2):147-61. PubMed ID: 15823404
[TBL] [Abstract][Full Text] [Related]
10. XenDB: full length cDNA prediction and cross species mapping in Xenopus laevis.
Sczyrba A; Beckstette M; Brivanlou AH; Giegerich R; Altmann CR
BMC Genomics; 2005 Sep; 6():123. PubMed ID: 16162280
[TBL] [Abstract][Full Text] [Related]
11. Genome-scale reconstruction and in silico analysis of the Clostridium acetobutylicum ATCC 824 metabolic network.
Lee J; Yun H; Feist AM; Palsson BØ; Lee SY
Appl Microbiol Biotechnol; 2008 Oct; 80(5):849-62. PubMed ID: 18758767
[TBL] [Abstract][Full Text] [Related]
12. MrBac: a web server for draft metabolic network reconstructions for bacteria.
Liao YC; Chen JC; Tsai MH; Tang YH; Chen FC; Hsiung CA
Bioeng Bugs; 2011; 2(5):284-7. PubMed ID: 22008641
[TBL] [Abstract][Full Text] [Related]
13. CONSORF: a consensus prediction system for prokaryotic coding sequences.
Kang S; Yang SJ; Kim S; Bhak J
Bioinformatics; 2007 Nov; 23(22):3088-90. PubMed ID: 17977885
[TBL] [Abstract][Full Text] [Related]
14. Benchmarking PSI-BLAST in genome annotation.
Müller A; MacCallum RM; Sternberg MJ
J Mol Biol; 1999 Nov; 293(5):1257-71. PubMed ID: 10547299
[TBL] [Abstract][Full Text] [Related]
15. Structural and functional insights into Mimivirus ORFans.
Saini HK; Fischer D
BMC Genomics; 2007 May; 8():115. PubMed ID: 17490476
[TBL] [Abstract][Full Text] [Related]
16. MaGe: a microbial genome annotation system supported by synteny results.
Vallenet D; Labarre L; Rouy Z; Barbe V; Bocs S; Cruveiller S; Lajus A; Pascal G; Scarpelli C; Médigue C
Nucleic Acids Res; 2006; 34(1):53-65. PubMed ID: 16407324
[TBL] [Abstract][Full Text] [Related]
17. Tracembler--software for in-silico chromosome walking in unassembled genomes.
Dong Q; Wilkerson MD; Brendel V
BMC Bioinformatics; 2007 May; 8():151. PubMed ID: 17490482
[TBL] [Abstract][Full Text] [Related]
18. GenTHREADER: an efficient and reliable protein fold recognition method for genomic sequences.
Jones DT
J Mol Biol; 1999 Apr; 287(4):797-815. PubMed ID: 10191147
[TBL] [Abstract][Full Text] [Related]
19. transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences.
Bininda-Emonds OR
BMC Bioinformatics; 2005 Jun; 6():156. PubMed ID: 15969769
[TBL] [Abstract][Full Text] [Related]
20. methBLAST and methPrimerDB: web-tools for PCR based methylation analysis.
Pattyn F; Hoebeeck J; Robbrecht P; Michels E; De Paepe A; Bottu G; Coornaert D; Herzog R; Speleman F; Vandesompele J
BMC Bioinformatics; 2006 Nov; 7():496. PubMed ID: 17094804
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
