4200 related articles for article (PubMed ID: 15318951)
1. MUSCLE: a multiple sequence alignment method with reduced time and space complexity.
Edgar RC
BMC Bioinformatics; 2004 Aug; 5():113. PubMed ID: 15318951
[TBL] [Abstract][Full Text] [Related]
2. MUSCLE: multiple sequence alignment with high accuracy and high throughput.
Edgar RC
Nucleic Acids Res; 2004; 32(5):1792-7. PubMed ID: 15034147
[TBL] [Abstract][Full Text] [Related]
3. OXBench: a benchmark for evaluation of protein multiple sequence alignment accuracy.
Raghava GP; Searle SM; Audley PC; Barber JD; Barton GJ
BMC Bioinformatics; 2003 Oct; 4():47. PubMed ID: 14552658
[TBL] [Abstract][Full Text] [Related]
4. MSAProbs: multiple sequence alignment based on pair hidden Markov models and partition function posterior probabilities.
Liu Y; Schmidt B; Maskell DL
Bioinformatics; 2010 Aug; 26(16):1958-64. PubMed ID: 20576627
[TBL] [Abstract][Full Text] [Related]
5. Improvement in the accuracy of multiple sequence alignment program MAFFT.
Katoh K; Kuma K; Miyata T; Toh H
Genome Inform; 2005; 16(1):22-33. PubMed ID: 16362903
[TBL] [Abstract][Full Text] [Related]
6. Assessing the efficiency of multiple sequence alignment programs.
Pais FS; Ruy PC; Oliveira G; Coimbra RS
Algorithms Mol Biol; 2014 Mar; 9(1):4. PubMed ID: 24602402
[TBL] [Abstract][Full Text] [Related]
7. ProbCons: Probabilistic consistency-based multiple sequence alignment.
Do CB; Mahabhashyam MS; Brudno M; Batzoglou S
Genome Res; 2005 Feb; 15(2):330-40. PubMed ID: 15687296
[TBL] [Abstract][Full Text] [Related]
8. QuickProbs--a fast multiple sequence alignment algorithm designed for graphics processors.
GudyĆ A; Deorowicz S
PLoS One; 2014; 9(2):e88901. PubMed ID: 24586435
[TBL] [Abstract][Full Text] [Related]
9. Mind the gaps: evidence of bias in estimates of multiple sequence alignments.
Golubchik T; Wise MJ; Easteal S; Jermiin LS
Mol Biol Evol; 2007 Nov; 24(11):2433-42. PubMed ID: 17709332
[TBL] [Abstract][Full Text] [Related]
10. Optimizing substitution matrix choice and gap parameters for sequence alignment.
Edgar RC
BMC Bioinformatics; 2009 Dec; 10():396. PubMed ID: 19954534
[TBL] [Abstract][Full Text] [Related]
11. transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences.
Bininda-Emonds OR
BMC Bioinformatics; 2005 Jun; 6():156. PubMed ID: 15969769
[TBL] [Abstract][Full Text] [Related]
12. A knowledge-based multiple-sequence alignment algorithm.
Nguyen KD; Pan Y
IEEE/ACM Trans Comput Biol Bioinform; 2013; 10(4):884-96. PubMed ID: 24334383
[TBL] [Abstract][Full Text] [Related]
13. Multiple sequence alignment.
Edgar RC; Batzoglou S
Curr Opin Struct Biol; 2006 Jun; 16(3):368-73. PubMed ID: 16679011
[TBL] [Abstract][Full Text] [Related]
14. Probalign: multiple sequence alignment using partition function posterior probabilities.
Roshan U; Livesay DR
Bioinformatics; 2006 Nov; 22(22):2715-21. PubMed ID: 16954142
[TBL] [Abstract][Full Text] [Related]
15. MAFFT version 5: improvement in accuracy of multiple sequence alignment.
Katoh K; Kuma K; Toh H; Miyata T
Nucleic Acids Res; 2005; 33(2):511-8. PubMed ID: 15661851
[TBL] [Abstract][Full Text] [Related]
16. MSAIndelFR: a scheme for multiple protein sequence alignment using information on indel flanking regions.
Al-Shatnawi M; Ahmad MO; Swamy MN
BMC Bioinformatics; 2015 Nov; 16():393. PubMed ID: 26597571
[TBL] [Abstract][Full Text] [Related]
17. Multiple sequence alignment based on profile alignment of intermediate sequences.
Lu Y; Sze SH
J Comput Biol; 2008 Sep; 15(7):767-77. PubMed ID: 18662101
[TBL] [Abstract][Full Text] [Related]
18. Evaluation of protein multiple alignments by SAM-T99 using the BAliBASE multiple alignment test set.
Karplus K; Hu B
Bioinformatics; 2001 Aug; 17(8):713-20. PubMed ID: 11524372
[TBL] [Abstract][Full Text] [Related]
19. GramAlign: fast alignment driven by grammar-based phylogeny.
Russell DJ
Methods Mol Biol; 2014; 1079():171-89. PubMed ID: 24170402
[TBL] [Abstract][Full Text] [Related]
20. Evolutionary HMMs: a Bayesian approach to multiple alignment.
Holmes I; Bruno WJ
Bioinformatics; 2001 Sep; 17(9):803-20. PubMed ID: 11590097
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]